CB290339

Overview
NameCB290339
Unique NameCB290339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: ASP6_CAEEL (Aspartic protease 6 OS=Caenorhabditis elegans GN=asp-6 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.746e-20
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  289 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARF-----DGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 741
            + +F D +Y G I IG+P Q F V+ DTGSSNLW+P   C    +C   S++ S  S+T+ + GKS  I YGSG  +G   Q               +  T  G  + + A F     DGI+GL F  +AV   VP   N + QG++ + +FS WL
Sbjct:   63 VNDFGDFEYLGNITIGTPDQGFIVVLDTGSSNLWIPGPTC--KTNCKTKSKFDSTASSTFVKNGKSWTIQYGSGDAAGILGQDTVRFGAKGDSQLS-VPTTTFGIASKISADFKNDATDGILGLAFTSLAVDGVVPPLINAINQGILDQPLFSVWL 215          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: CARP_SYNRA (Syncephapepsin OS=Syncephalastrum racemosum GN=SPSR PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.134e-18
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 1
Query:  304 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIE-ATREGSLTFLLARFDGIIGLGFREIA--VGDAVPVWDNMVEQGLVSEEVFSFWLNR 747
            D +Y+  + +G+P Q+  + FDTGSS+LW  S+ C    SC   S +   KS+TY ++GKS +I+YG GS +   +                IE ATRE S +F     DGI+GLGF  I+   G   PV DN++ Q L+S+ +F  WL +
Sbjct:   86 DVEYYATVSVGTPAQSIKLDFDTGSSDLWFSSTLC---TSCGSKS-FDPTKSSTYKKVGKSWQISYGDGSSASGITATDNVELGGLKITGQTIELATRESS-SFSSGAIDGILGLGFDTISTVAGTKTPV-DNLISQNLISKPIFGVWLGK 230          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: CARP1_RHINI (Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 57/192 (29.69%), Postives = 92/192 (47.92%), Query Frame = 1
Query:  181 HSLNAARITRKERYMGGAGVSGVRHRLGDSDEDILPLKNFM-DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNR 747
            ++LN A      R +G  G++             +P+ ++  D +Y+GE+ +G+P     + FDTGSS++W  S+ C  S     H++Y  +KS+TY   G++  I+YG GS +                    IE  +  S  F     DG++GLGF  I    G   PV DN++ QGL+S  +F  +L +
Sbjct:   44 NALNKALAKYNRRKVGSGGIT-------TEASGSVPMVDYENDVEYYGEVTVGTPGIKLKLDFDTGSSDMWFASTLC--SSCSNSHTKYDPKKSSTYAADGRTWSISYGDGSSASGILATDNVNLGGLLIKKQTIELAKRESSAFATDVIDGLLGLGFNTITTVRGVKTPV-DNLISQGLISRPIFGVYLGK 225          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: CARP5_RHINI (Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  298 FMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISC-YFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRD 750
            + D +YFG++ +G+P     + FDTGSS+LW  SS C    +C Y  ++Y   +S TY + G++  I+YG GS +                    IE  R  + +F     DG++GLGF  I    G   PV DN++ QGL+S  VF  +L ++
Sbjct:   80 YNDIEYFGQVKVGTPGVTLKLDFDTGSSDLWFASSLC---TNCGYSQTKYNPNQSRTYAKDGRAWSISYGDGSSASGILGTDTVVLGGLTIQRQTIELARREASSFQNGPSDGLLGLGFNSITTVRGVKTPV-DNLISQGLISNPVFGVYLGKE 229          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: CARP_RHICH (Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 49/164 (29.88%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  265 DSDEDILPLKNF-MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISC-YFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPV-WDNMVEQGLVSEEVFSFWLNR 747
            D+    +P+ ++  D +Y+G++ IG+P + F++ FDTGSS+LW+ S+ C    +C    ++Y  ++S+TY   G++  I+YG GS +                    IE  +  + +F     DG++GLGF  I     V    DN++ QGL+S  +F  +L +
Sbjct:   68 DAGVGTVPMTDYGNDVEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC---TNCGSRQTKYDPKQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFANGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGK 228          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: CARP3_RHINI (Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 51/153 (33.33%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  298 FMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRD 750
            + D +Y+GE+ +G+P     + FDTGSS+LW  SS C    S    ++Y   +S+TY   G++  I+YG GS +                    IE  R  +  F     DG++GLGF  I    G   PV DN++ QGL+S  VF  +L ++
Sbjct:   79 YNDIEYYGEVTVGTPGVTLKLDFDTGSSDLWFASSLCTNCGSS--QTKYNPNESSTYARDGRTWSISYGDGSSASGILGTDTVILGGLTIRHQTIELARREASQFQSGPSDGLLGLGFDSITTVRGVKTPV-DNLISQGLISNPVFGVYLGKE 228          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: CARP4_RHINI (Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 47/150 (31.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  304 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPV-WDNMVEQGLVSEEVFSFWLNRD 750
            D +Y+GE+ +G+P     + FDTGSS+LW  S+ C    S    ++Y   +S+TY + G++  I+YG GS +                    IE  +  + +F     DG++GLGF  I     V    DN++ QGL+S  VF  +L ++
Sbjct:   87 DIEYYGEVTVGTPGIKLKLDFDTGSSDLWFASTLCTNCGSS--QTKYDPSQSSTYAKDGRTWSISYGDGSSASGILGKDTVNLGGLKIKNQIIELAKREASSFSSGPSDGLLGLGFDSITTVSGVQTPMDNLISQGLISNPVFGVYLGKE 234          
BLAST of CB290339 vs. ExPASy Swiss-Prot
Match: CARP2_RHINI (Rhizopuspepsin-2 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 46/153 (30.07%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  298 FMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRD 750
            + D +Y+G++ +G+P     + FDTGSS+LW  S+ C    S    ++Y   +S+TY + G++  I+YG GS +                    IE  +  + +F      G++GLGF  I    G   PV DN++ QGL+S+ +F  +L ++
Sbjct:   79 YNDIEYYGKVTVGTPGVTLKLDFDTGSSDLWFASTLCTNCGSS--QTKYNPNQSSTYAKDGRTWSISYGDGSSASGILGTDTVTLGGLKITKQTIELAKREATSFQSGPSYGLLGLGFDTITTVRGVKTPV-DNLISQGLISKPIFGVYLGKE 228          
The following BLAST results are available for this feature:
BLAST of CB290339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
ASP6_CAEEL1.746e-2036.54Aspartic protease 6 OS=Caenorhabditis elegans GN=a... [more]
CARP_SYNRA2.134e-1837.75Syncephapepsin OS=Syncephalastrum racemosum GN=SPS... [more]
CARP1_RHINI1.807e-1729.69Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 S... [more]
CARP5_RHINI3.082e-1733.77Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2[more]
CARP_RHICH5.812e-1629.88Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2[more]
CARP3_RHINI5.812e-1633.33Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1[more]
CARP4_RHINI2.885e-1531.33Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1[more]
CARP2_RHINI4.165e-1430.07Rhizopuspepsin-2 OS=Rhizopus niveus PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290339 ID=CB290339; Name=CB290339; organism=Citrus sinensis; type=EST; length=753bp
GCCGTTAAGCTTCCTTTACTTTGCTTCAAACTCAGCTTCAGCCGAAAACC
AAAGAACATCATGGAGCAGAAACTTCTTCGGTCAGTTTTCTGTTTATGGG
TGCTAGCGTCGTGCTTGCTTCTTCCTGCTTCCTCTAATGGCTTACGGAGA
ATTGGCTTGAAGAAGCGGCGACTAGATCTTCATAGTCTAAATGCTGCAAG
AATAACAAGAAAAGAGCGATATATGGGGGGAGCAGGTGTTAGTGGCGTGC
GCCATCGTTTGGGTGATTCAGATGAAGATATATTGCCTTTGAAGAACTTT
ATGGATGCTCAATACTTTGGAGAGATTGGTATTGGCTCTCCCCCACAAAA
TTTCAGTGTCATATTTGATACCGGCAGTTCCAATCTCTGGGTTCCATCTT
CAAAGTGCTATTTCTCTATTTCCTGCTATTTCCATTCGAGGTACAAGTCC
AGAAAATCCAATACATATACCGAAATTGGAAAATCCTGTGAAATAAACTA
TGGATCTGGATCAATTTCTGGCTTCTTCAGTCAAGACAATGTTGAAGTTG
GGGATGTTGTTGTCAAGGATCAGGTTTTCATTGAGGCTACACGAGAAGGG
AGTCTCACTTTTCTATTGGCAAGGTTTGATGGAATAATAGGGCTTGGGTT
CCGGGAAATTGCAGTTGGGGATGCTGTGCCTGTGTGGGACAATATGGTTG
AGCAGGGCCTTGTAAGCGAGGAGGTCTTCTCATTCTGGCTCAACAGGGAT
CCA
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