CB290341

Overview
NameCB290341
Unique NameCB290341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_TRIGR (60S ribosomal protein L22 OS=Tripneustes gratilla GN=RPL22 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.147e-21
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F I C  PVED IMD ++ E+FLQERIKV GK   L  ++ + R+K+K+TVTS+  FS              +N+RDWLRV+A+NK+   YELRYF I +++ EEED
Sbjct:   25 FTIDCTLPVEDGIMDASNFEQFLQERIKVNGKTKNLTTNIVIERKKSKVTVTSEIAFSKRYLKYLTKKYLKKNNLRDWLRVVAANKES--YELRYFQINQDDEEEED 129          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_XENTR (60S ribosomal protein L22 OS=Xenopus tropicalis GN=rpl22 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.984e-20
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F + C  PVED IMD A+ E+FL +RIKV GK G LG   V++ R K+KITV+S+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKITVSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_XENLA (60S ribosomal protein L22 OS=Xenopus laevis GN=rpl22 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.984e-20
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F + C  PVED IMD A+ E+FL +RIKV GK G LG   V++ R K+KITV+S+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKITVSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_DROME (60S ribosomal protein L22 OS=Drosophila melanogaster GN=RpL22 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.514e-19
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            F I C    ED IMD+A  EK+++ R+KV GK   LG++VT  R K K+ V+SD +FS              +++RDW+RV+A+ KD   YELRYF I+ N+ E++D
Sbjct:  193 FTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDS--YELRYFRISSNDDEDDD 297          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22L_XENTR (60S ribosomal protein L22-like 1 OS=Xenopus tropicalis GN=rpl22l1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.729e-18
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  103 TFVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            +F +    PVED I D  + E+FL+ERIKV GK G LG  V + R K+KITV+S+  FS              +N+RDWLRV+AS  D+  YELRYF I++++  E +
Sbjct:   14 SFTLDLTHPVEDGIFDSVNFEQFLKERIKVNGKTGNLGSIVHIGRLKSKITVSSEKKFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDDESESE 119          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_GADMO (60S ribosomal protein L22 (Fragment) OS=Gadus morhua GN=rpl22 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGE 417
            F + C  PVED IMD A+ E+FLQERIKV GK+G LG+  V++ R  +KI+V S+  FS              +N+RDWLRV+A+ K+   YELRYF I ++E E
Sbjct:   18 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKSGNLGNGVVSIERXXSKISVNSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEE 120          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22L_HUMAN (60S ribosomal protein L22-like 1 OS=Homo sapiens GN=RPL22L1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  127 PVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 423
            PVED I D  + E+FL+E++KV GK G LG+ V + R K KITV S+  FS              +N+RDWLRV+AS  D+  YELRYF I+++E E E
Sbjct:   23 PVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDEDESE 119          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22L_MOUSE (60S ribosomal protein L22-like 1 OS=Mus musculus GN=Rpl22l1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.417e-17
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  127 PVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENE--GEEED 426
            PVED I D  + E+FL+E++KV GK G LG+ V + R K KITV S+  FS              +N+RDWLRV+AS  D+  YELRYF I+++E   E ED
Sbjct:   23 PVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERLKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDEDGSESED 122          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_SCHPO (60S ribosomal protein L22 OS=Schizosaccharomyces pombe GN=rpl22 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRE-KTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 423
            ++I     V DKI D+A+ EK+L +RIKV GK G LG SV V+RE  +KI V +  +FS              H++RDWLRV+++ K   VYELRY+N+     EEE
Sbjct:   12 YIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKK--GVYELRYYNVVVGNDEEE 116          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22L_BOVIN (60S ribosomal protein L22-like 1 OS=Bos taurus GN=RPL22L1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  130 VEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEE 423
            VED I D  + E+FL+E++KV GK G LG+ V + R K KI V S+  FS              +N+RDWLRV+AS  D+  YELRYF I+++E E E
Sbjct:   24 VEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKIIVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS--DKETYELRYFQISQDEDESE 119          
The following BLAST results are available for this feature:
BLAST of CB290341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL22_TRIGR6.147e-2148.6060S ribosomal protein L22 OS=Tripneustes gratilla ... [more]
RL22_XENTR3.984e-2049.0760S ribosomal protein L22 OS=Xenopus tropicalis GN... [more]
RL22_XENLA3.984e-2049.0760S ribosomal protein L22 OS=Xenopus laevis GN=rpl... [more]
RL22_DROME7.514e-1942.9960S ribosomal protein L22 OS=Drosophila melanogast... [more]
RL22L_XENTR3.729e-1844.4460S ribosomal protein L22-like 1 OS=Xenopus tropic... [more]
RL22_GADMO4.870e-1847.6260S ribosomal protein L22 (Fragment) OS=Gadus morh... [more]
RL22L_HUMAN4.870e-1847.4760S ribosomal protein L22-like 1 OS=Homo sapiens G... [more]
RL22L_MOUSE2.417e-1747.0660S ribosomal protein L22-like 1 OS=Mus musculus G... [more]
RL22_SCHPO1.200e-1643.9360S ribosomal protein L22 OS=Schizosaccharomyces p... [more]
RL22L_BOVIN1.567e-1645.9260S ribosomal protein L22-like 1 OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290341 ID=CB290341; Name=CB290341; organism=Citrus sinensis; type=EST; length=661bp
GTCCGTTGGGAAATTGTACAATTCGTAGTGCGGCGGAGCAGCCTCGGGAA
AATGAGTCGCGGAGCAGCAGCAGCAGGGGTGAAGGGGAAGAAAAAGGGAG
CGACCTTCGTGATCCACTGCGGGAAGCCTGTGGAGGACAAAATCATGGAC
ATTGCGTCCTTGGAAAAGTTCCTCCAGGAGCGGATCAAGGTCGGCGGCAA
GGCTGGTGCCCTTGGGGATTCAGTTACCGTCACCCGTGAGAAGACCAAGA
TCACCGTCACTTCTGACAGCAACTTCTCTAAGAGGTATCTTAAATATTTG
ACCAAGAAGTACTTGAAGAAACACAATGTAAGAGATTGGCTCCGAGTAAT
TGCTTCAAACAAGGACCGAAGTGTCTATGAGCTGCGATACTTCAACATTG
CTGAGAATGAGGGAGAGGAGGAAGACTGAAGATCCATTTCAGTATTTCCT
CATATTATATCTATTCTGATTACTTGTTCTAGCTCTTTTTTCTTTTTTTC
TCCTGCGATCAAATCTGTGGACTTGTTTGAATTGTTTATGAGATCATTCT
TAGTTTATGTTCTGTTGAAATTTTGTTTACTTTTTAGATATATGTTTTTT
TTTTTGGGTTGTATAAGATGCTTTAATACTATGCCAGTTTTTTCTAAAAA
AAAAAAAAAAA
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