CB290341

Overview
NameCB290341
Unique NameCB290341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL221_DICDI (60S ribosomal protein L22 1 OS=Dictyostelium discoideum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 420
            FVI C  P   KI+D+A+ EK+L +RIKV  K G LG +V ++++K+KI + +   FS                +RD+LRV+A+ K  + YELRYFNI ++E +E
Sbjct:   15 FVIDCTAPA-GKIVDVAAFEKYLHDRIKVDNKVGNLGSTVVISKDKSKIIINTTIPFSKRYLKYLTKKFLKFKQIRDFLRVVATTK--NTYELRYFNIGDSESQE 116          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL222_DICDI (60S ribosomal protein L22 2 OS=Dictyostelium discoideum GN=rpl22a PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 420
            FVI C  P   KI+D+A+ EK+L +RIKV  K   LG +V ++++K+KI + +   FS                +RD+LRV+A+ K  + YELRYFNI ++E +E
Sbjct:   15 FVIDCTAPA-GKIVDVAAFEKYLHDRIKVDNKVSNLGSNVVISKDKSKIIINTTIPFSKRYLKYLTKKFLKFKQIRDFLRVVATTK--NTYELRYFNIGDSESQE 116          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22_CAEEL (60S ribosomal protein L22 OS=Caenorhabditis elegans GN=rpl-22 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  106 FVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGAL-GDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEE 420
            F + C  PVED I+ I  LE FL E+IKV GK G L  ++V V   K+K++V S+  FS              +++RDWLRV+A NK  + YE+RYF+I  N+GE+
Sbjct:   23 FNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNK--NTYEVRYFHI--NDGED 124          
BLAST of CB290341 vs. ExPASy Swiss-Prot
Match: RL22A_YEAST (60S ribosomal protein L22-A OS=Saccharomyces cerevisiae GN=RPL22A PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  103 TFVIHCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 426
            TF +    P E+ + D AS  K+L + IKV G  G LG++VTVT + T +TV S + FS              + +RDW+R +++  +   Y L ++ +   E EEED
Sbjct:   14 TFTVDVSSPTENGVFDPASYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVSTAKFSGKYLKYLTKKYLKKNQLRDWIRFVSTKTNE--YRLAFYQVTPEEDEEED 119          
The following BLAST results are available for this feature:
BLAST of CB290341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL221_DICDI2.955e-1540.9560S ribosomal protein L22 1 OS=Dictyostelium disco... [more]
RL222_DICDI1.466e-1440.0060S ribosomal protein L22 2 OS=Dictyostelium disco... [more]
RL22_CAEEL3.267e-1443.4060S ribosomal protein L22 OS=Caenorhabditis elegan... [more]
RL22A_YEAST2.341e-1234.2660S ribosomal protein L22-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290341 ID=CB290341; Name=CB290341; organism=Citrus sinensis; type=EST; length=661bp
GTCCGTTGGGAAATTGTACAATTCGTAGTGCGGCGGAGCAGCCTCGGGAA
AATGAGTCGCGGAGCAGCAGCAGCAGGGGTGAAGGGGAAGAAAAAGGGAG
CGACCTTCGTGATCCACTGCGGGAAGCCTGTGGAGGACAAAATCATGGAC
ATTGCGTCCTTGGAAAAGTTCCTCCAGGAGCGGATCAAGGTCGGCGGCAA
GGCTGGTGCCCTTGGGGATTCAGTTACCGTCACCCGTGAGAAGACCAAGA
TCACCGTCACTTCTGACAGCAACTTCTCTAAGAGGTATCTTAAATATTTG
ACCAAGAAGTACTTGAAGAAACACAATGTAAGAGATTGGCTCCGAGTAAT
TGCTTCAAACAAGGACCGAAGTGTCTATGAGCTGCGATACTTCAACATTG
CTGAGAATGAGGGAGAGGAGGAAGACTGAAGATCCATTTCAGTATTTCCT
CATATTATATCTATTCTGATTACTTGTTCTAGCTCTTTTTTCTTTTTTTC
TCCTGCGATCAAATCTGTGGACTTGTTTGAATTGTTTATGAGATCATTCT
TAGTTTATGTTCTGTTGAAATTTTGTTTACTTTTTAGATATATGTTTTTT
TTTTTGGGTTGTATAAGATGCTTTAATACTATGCCAGTTTTTTCTAAAAA
AAAAAAAAAAA
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