CB290343

Overview
NameCB290343
Unique NameCB290343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 5.946e-53
Identity = 94/180 (52.22%), Postives = 126/180 (70.00%), Query Frame = 3
Query:   42 VXCVYAQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRT-DW 569
            V  +   GW   HATFY              YGNLY++GYGT TAALSTALFN+G++CG C+++ C    D  WC+ G S+ +TATNFC  N  LP+++GGWCN  + HFD++QP +E+I  Y+ GI+PV Y+RVPC +KGG+RFTINGH YF LVL+TNVG  G ++A+ +KGS++ DW
Sbjct:   26 VGALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDW 205          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.014e-52
Identity = 94/165 (56.97%), Postives = 124/165 (75.15%), Query Frame = 3
Query:   81 ATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            ATFY              YGNLYS GYGTNTAALS+ALFN+G +CG C++I C  ++ +WC+AG S+ +TATN C  + + P+N GGWCN  +QHFD++QP +EQI  Y+ GIVPV+++RV C+RKGG+RFTING+SYF LVLITNVGG G +++V IKG++T W
Sbjct:   29 ATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGW 193          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.325e-52
Identity = 98/174 (56.32%), Postives = 122/174 (70.11%), Query Frame = 3
Query:   57 AQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            A GW    ATFY              YG+LYS GYGTNTAALST LFN+G SCG C+ I C    D R+C +G S+ +TATN C  N ALPN+AGGWCN  +QHFD+++P + +I  Y  GIVPV Y+RVPC+++GG+RFTING  YF LVL++NVGG G +++VSIKGSRT W
Sbjct:   31 ASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGW 204          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.730e-52
Identity = 103/179 (57.54%), Postives = 124/179 (69.27%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVN----DPRWC---RAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIK---GSRTDW 569
            WTD HATFY              YGN Y +GYGT+TAALS  +F +G+SCGACFE++C      D R C    AG SI VTAT+ C  N+ALP + GGWCN    HFDLSQP F +IA++++GIVPVSYRRV C RKGG+RFTINGHSYFNLVL++NVGG GDV AV++K   G +  W
Sbjct:   30 WTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARW 208          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 2.951e-52
Identity = 95/171 (55.56%), Postives = 121/171 (70.76%), Query Frame = 3
Query:   57 AQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVN--DPRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSR 560
            A GW+   ATFY              YGNLY++GYGT TAALSTALF++G SCG C+ + C    DPRWCRAG S+ VTATNFC  N ALP++ GGWCN  + HFD++QP +E+I  Y+ GIVPV++RRVPC R+GG+RFT+ G  YF LVL+TNV   G VR++ ++GSR
Sbjct:   31 ASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSR 201          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.951e-52
Identity = 102/190 (53.68%), Postives = 126/190 (66.32%), Query Frame = 3
Query:   12 GLMLLGIXYL-VXCVYAQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVN--DPRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            GL +L   ++ V      G T+ HATFY              YG+LYS GYGT TAALSTALFN+G SCG C+ I C +  D RWC  G S+ +TATNFC  N ALPNN GGWCN   +HFD++QP +E+I  Y+ GIVPV ++RV C +KGG+RF ING  YF LV I NVGG G +++VSIKGS+T W
Sbjct:    7 GLAVLAALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGW 196          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 5.565e-51
Identity = 96/166 (57.83%), Postives = 115/166 (69.28%), Query Frame = 3
Query:   81 ATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRAG--SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            ATFY              YGNLY+ GYG   AALS+ALFN+G  CGAC+ I C  +  +WC+ G  SI +TATN C  N ALP+N+GGWCN  +QHFD+SQP +E IA Y+AGIVPV+Y+RVPC R GGIRF I+GH YF LV +TNVGG G V  +SIKGS T W
Sbjct:   33 ATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGW 198          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 9.493e-51
Identity = 93/172 (54.07%), Postives = 120/172 (69.77%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND--PRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSR-TDW 569
            W   HATFY              YG+LYS+GYGT  AALSTALFN+G SCG C++I C     P+WCR G ++ +TATNFC  N  LP++ GGWCN  + HFD++QP +E+I  Y+AGI+PV Y+RVPC +KGG+RFTINGH YFNLVL+TNV   G ++++ + GS  TDW
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDW 223          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 9.493e-51
Identity = 93/172 (54.07%), Postives = 119/172 (69.19%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND--PRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSR-TDW 569
            W   HATFY              YG+LYS+GYGT  AALSTALFN+G SCG C++I C     P+WC+ G ++ +TATNFC  N  LP++ GGWCN  + HFD++QP +E+I  Y AGI+PV Y+RVPC +KGG+RFTINGH YFNLVL+TNV   G ++++ I GS  TDW
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDW 205          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.240e-50
Identity = 92/172 (53.49%), Postives = 118/172 (68.60%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND--PRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRT-DW 569
            W   HATFY              YGNLYS+GYGT  AALSTALFN+G SCG C++I C     P+WC+ G ++ +TATNFC  N  LP++ GGWCN  + HFD++QP +E+I  Y AGI+PV Y+RVPC +KGG+RFTINGH YF LVL+TNV   G ++++ + GS T DW
Sbjct:   39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADW 210          
The following BLAST results are available for this feature:
BLAST of CB290343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP13_ORYSJ5.946e-5352.22Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ1.014e-5256.97Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ1.325e-5256.32Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP21_ORYSJ1.730e-5257.54Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ2.951e-5255.56Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH2.951e-5253.68Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA3_ORYSJ5.565e-5157.83Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP22_ORYSJ9.493e-5154.07Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ9.493e-5154.07Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ1.240e-5053.49Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290343 ID=CB290343; Name=CB290343; organism=Citrus sinensis; type=EST; length=569bp
TGGAATTTNTTGGGTTGATGTTGTTGGGGATTNTTTATTTAGTGTNATGT
GTTTATGCCCAAGGATGGACTGATGATCATGCNACTTTTTATGGTGGGGG
TGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTATACA
GCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCACTTTTCAAC
AATGGCATGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCC
AAGATGGTGCCGTGCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCG
CTCGAAATAATGCTCTCCCAAACAATGCCGGTGGTTGGTGCAATCTTCAC
CAGCAACATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTA
CAAAGCTGGGATAGTACCTGTGTCTTACAGAAGGGTTCCATGCAGTAGGA
AGGGAGGTATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTAGTC
CTAATCACAAACGTCGGAGGCGATGGTGATGTGCGTGCTGTTTCAATCAA
AGGGTCAAGAACTGATTGG
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