CB290343

Overview
NameCB290343
Unique NameCB290343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 2.762e-50
Identity = 93/174 (53.45%), Postives = 119/174 (68.39%), Query Frame = 3
Query:   57 AQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRAGS-IFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            A GW    ATFY              YGNLY+ GYGTNTAALS+ LFN+G SCG C+ I C     P+WCRAG+ + +TATN C  N ALP+N+GGWCN  + HFD+++P + QI  YKAGI+PV Y++V C R+GGIRFT+ G ++F LVL++NV G G VR+VS+KG  T W
Sbjct:   24 AHGWNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGW 197          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 3.607e-50
Identity = 93/172 (54.07%), Postives = 119/172 (69.19%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND--PRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSR-TDW 569
            W   HATFY              Y +LYS+GYGT  AALSTALFN+G SCG C++I C     P+WC+ G ++ VTATNFC  N  LP++ GGWCN  + HFD++QP +E+I  Y+AGI+PV Y+RVPC +KGG+RFTINGH YFNLVL+TNV   G ++++ I GS  TDW
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDW 221          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 4.711e-50
Identity = 92/169 (54.44%), Postives = 117/169 (69.23%), Query Frame = 3
Query:   63 GWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            GW    ATFY              YG+L+ +GYG  TAALSTALFNNG  CGAC+EI C + P+WC  GSI +TATNFC  +   PN+   WCN  Q+HFDLSQP+F +IA+YKAG+VPV +RRVPC++ GG++F I G+ +F ++L  NVGG G VRA+ IKG+RT W
Sbjct:   89 GWGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPND--NWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQW 255          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 8.036e-50
Identity = 94/174 (54.02%), Postives = 117/174 (67.24%), Query Frame = 3
Query:   57 AQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRAGS-IFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            A GW    ATFY              YGNLY++GYG   AALSTALFN G SCG C+ I C     P WC+AG+ + +TATN C  N AL N+ GGWCN  + HFD+SQP +E I  Y+AGIVPV Y++V C R+GG+RFT++G +YF LVLITNV G G V+A+S+KGS+T W
Sbjct:   24 AGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGW 197          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.050e-49
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            W D  ATFY              YGNL+ +GYG  TAALSTALFN+G +CGAC+EI C  DP+WC  GS+ +TATNFC  N +   +   WCN  Q+HFDLS  +F +IA+YKAG+VPV YRR+PCS+ GG++F   G+ YF +VLI NVGG GD++ V +KG++T W
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGW 217          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.371e-49
Identity = 100/187 (53.48%), Postives = 123/187 (65.78%), Query Frame = 3
Query:   15 LMLLGIXYLVXCVYAQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            L+L  + Y    V AQ WT   ATFY              YGNLY+ GYG N AALS+ALFN+G  CGAC+ I C  +   WC+ G SI +TATN C  N A  ++AGGWCN  ++HFD+SQP +  IA Y+AGIVPV+++RVPC + GGIRFTI+G  YF LV + NVGG G V  VSIKGS+TDW
Sbjct:    9 LLLCALAY--QAVDAQ-WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDW 192          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.371e-49
Identity = 94/171 (54.97%), Postives = 118/171 (69.01%), Query Frame = 3
Query:   63 GWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTD 566
            GW   HATFY              YGNLY++GY TNTAALSTALFN+G SCG C++I C     P+WC  G SI +TATNFC  N A  ++ GGWCN  + HFD++QP F  IA+YKAGIVP+ Y++V C R GG+RFTING +YF LVLI+NV G G++  V IKGS+++
Sbjct:   27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSN 197          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.338e-49
Identity = 87/168 (51.79%), Postives = 114/168 (67.86%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            W D  ATFY              YG+L+ +GYG  TAALSTALFN G +CGAC++I CVNDP+WC  GS+ +TATNFC  + +     G WCN  Q+HFDLS P+F +IAQYKAG+VPV YRR+ C+R GG++F   G+ YF ++L  NVGG GD++ + +KG +T W
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPDYS--KTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGW 213          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 8.885e-49
Identity = 93/173 (53.76%), Postives = 114/173 (65.90%), Query Frame = 3
Query:   57 AQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            AQ WT   ATFY              YGN+YS GYGTNT ALS+AL+ +G SCGAC+ + C  +  RWC+ G S+ VTATN+C  N +   +AGGWCN  ++HFD+SQP +E IA Y +GIVPV Y R PC R GGIRF I GH Y+ LVL+TNV G G V A  +KGS T+W
Sbjct:   24 AQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEW 196          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 8.885e-49
Identity = 88/168 (52.38%), Postives = 114/168 (67.86%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            W D  ATFY              YGNL+ +GYG  TAALSTALFN+G +CGAC+EI C  DP+WC  GS+ +TATNFC  N +   +   WCN  Q+HFDLS  +F +IA+YKAG+VPV YRR+PCS+ GG++F   G+ YF +VLI NVGG GD++ V +K ++T W
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGW 223          
The following BLAST results are available for this feature:
BLAST of CB290343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP25_ORYSJ2.762e-5053.45Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ3.607e-5054.07Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH4.711e-5054.44Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP28_ORYSJ8.036e-5054.02Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH1.050e-4952.98Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP33_ORYSJ1.371e-4953.48Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH1.371e-4954.97Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP23_ARATH2.338e-4951.79Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXPA9_ORYSJ8.885e-4953.76Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP26_ARATH8.885e-4952.38Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290343 ID=CB290343; Name=CB290343; organism=Citrus sinensis; type=EST; length=569bp
TGGAATTTNTTGGGTTGATGTTGTTGGGGATTNTTTATTTAGTGTNATGT
GTTTATGCCCAAGGATGGACTGATGATCATGCNACTTTTTATGGTGGGGG
TGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTATACA
GCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCACTTTTCAAC
AATGGCATGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCC
AAGATGGTGCCGTGCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCG
CTCGAAATAATGCTCTCCCAAACAATGCCGGTGGTTGGTGCAATCTTCAC
CAGCAACATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTA
CAAAGCTGGGATAGTACCTGTGTCTTACAGAAGGGTTCCATGCAGTAGGA
AGGGAGGTATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTAGTC
CTAATCACAAACGTCGGAGGCGATGGTGATGTGCGTGCTGTTTCAATCAA
AGGGTCAAGAACTGATTGG
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