CB290343

Overview
NameCB290343
Unique NameCB290343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.516e-48
Identity = 86/168 (51.19%), Postives = 114/168 (67.86%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            W D  ATFY              YG+L+ +GYG  TAALSTALFN G +CGAC++I CV+DP+WC  G+I +TATNFC  + +     G WCN  Q+HFDLS P+F +IAQYKAG+VPV YRR+ C+R GG++F   G+ YF ++L  NVGG GD++ + +KG +T W
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPDYS--KTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGW 220          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.516e-48
Identity = 90/171 (52.63%), Postives = 117/171 (68.42%), Query Frame = 3
Query:   63 GWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVN--DPRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTD 566
            GW+   ATFY              YGNLY  GYGTNTAALS+ALFN+G SCG C++I C +  +PRWC  G ++ +T TN C  N AL +N GGWCN  + HFD+++P + QI  YKAGIVPV Y+RVPC ++GG+RFT+ G +YF LVLI+NV G G +++V +KG  TD
Sbjct:   31 GWSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTD 201          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 5.759e-48
Identity = 91/174 (52.30%), Postives = 114/174 (65.52%), Query Frame = 3
Query:   57 AQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDP--RWCRA-GSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            A  W    ATFY              YGNLY +GYG   AALSTALFN+G +CG C+ I C  D   RWC+  G++ VTATN C  N ALP++ GGWCN  ++HFD+SQP +E+I  Y+AGIVPV YRRV C R+GG+RFT+ G  +F LVL+ NV G G V AVS++G+ T W
Sbjct:   24 ADDWIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGW 197          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.283e-47
Identity = 92/171 (53.80%), Postives = 114/171 (66.67%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND--PRWCRAGS-IFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            W+   ATFY              YGNLY +GYG + AALS ALFN+G SCG C+ I C     P+WC+AG+ + VTATN C  N ALP++ GGWCN  + HFD+SQP +EQI  Y+AGIVPV Y+RV C R+GG+RFT+ G +YF LVLITNV G G V +  IKG+ T W
Sbjct:   28 WSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGW 198          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.189e-47
Identity = 90/171 (52.63%), Postives = 111/171 (64.91%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGS--IFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGS-RTDW 569
            W   HATFY              Y +   EGYG  T A+ST LF  G  CGAC+E+KCV+ P  C+ G+  + VTATN C  N    N+ GGWCN  ++HFDLS P F QIAQ KAGIVP+SYRRVPC + GGIR+TI G+ YFNLV+++NVGG GDV  +S+KG+ R  W
Sbjct:   42 WKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKW 212          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.368e-47
Identity = 83/168 (49.40%), Postives = 111/168 (66.07%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            W   HATFY              YGNL++ GYG +TAALST LFN+G  CG CF+I C   P      S  VTATN C  N    +NAGGWCN  + HFD+++P F ++A ++AGI+PV+YRRVPC R GG+RF   G+SY+ L+ + NVGG GD++++++KGSRT+W
Sbjct:   37 WRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNW 204          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.419e-46
Identity = 96/188 (51.06%), Postives = 113/188 (60.11%), Query Frame = 3
Query:   15 LMLLGIXYLVXCVYAQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND--PRWCRAGS-IFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            L LL I  L       GW    ATFY              YGNLY +GYG N AALST LFNNG SCG C+ I C  D  P  CR G+ I VT TNFC  N  LP   GGWCN  + HFD+SQP +E I  Y AGIVP+ Y++V C R GG+RFTI G +YF LVL+TN+ G G + ++S+KGS T W
Sbjct:    6 LQLLAILALCIAPARSGWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGW 191          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.048e-45
Identity = 91/188 (48.40%), Postives = 113/188 (60.11%), Query Frame = 3
Query:   15 LMLLGIXYLVXCVYAQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRAG-SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            L LL +  L        W    ATFY              YGNLY +GYG N AALST LFN+G SCG C+ I C     P WC+ G +I VT TN+C  N  LP   GGWCN  + HFD+SQP +E I  Y AGI+P+ Y++V C R GG+RFTING +YF LVL+TN+ G G + ++S+KGS T W
Sbjct:    6 LQLLAVVALCIAPARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGW 191          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.048e-45
Identity = 87/170 (51.18%), Postives = 108/170 (63.53%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGS--IFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            W    ATFY              YGN+Y  GYG  T ALSTALFN G +CG CF++KCV+ P  C  GS    VTATN C  N    +N GGWCN  + HFDL++P F +IA +KAGI+PVSYRRV C + GGIRF   G+ Y+ LV + NVGG GD++ +++KGSRT W
Sbjct:   31 WRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGW 199          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.374e-41
Identity = 84/172 (48.84%), Postives = 111/172 (64.53%), Query Frame = 3
Query:   57 AQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWC-RAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQY-KAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSR 560
            + GW   HAT+Y              Y N Y  G+G +TAALS  LF +G SCG C++++C    DP+WC R  ++ VTATNFC  NN   NN  GWCNL + HFD+S P F +IA+    GIVPV YRRV C R+GG+RFT+ G   FN+V+I+NVGG G VR+V+++GS+
Sbjct:   24 SNGWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNN---NN--GWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSK 190          
The following BLAST results are available for this feature:
BLAST of CB290343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP25_ARATH1.516e-4851.19Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP15_ORYSJ1.516e-4852.63Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ5.759e-4852.30Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP31_ORYSJ1.283e-4753.80Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ2.189e-4752.63Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH6.368e-4749.40Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP18_ORYSJ1.419e-4651.06Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ2.048e-4548.40Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH2.048e-4551.18Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP12_ARATH1.374e-4148.84Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ah06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290343 ID=CB290343; Name=CB290343; organism=Citrus sinensis; type=EST; length=569bp
TGGAATTTNTTGGGTTGATGTTGTTGGGGATTNTTTATTTAGTGTNATGT
GTTTATGCCCAAGGATGGACTGATGATCATGCNACTTTTTATGGTGGGGG
TGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTATACA
GCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCACTTTTCAAC
AATGGCATGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCC
AAGATGGTGCCGTGCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCG
CTCGAAATAATGCTCTCCCAAACAATGCCGGTGGTTGGTGCAATCTTCAC
CAGCAACATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTA
CAAAGCTGGGATAGTACCTGTGTCTTACAGAAGGGTTCCATGCAGTAGGA
AGGGAGGTATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTAGTC
CTAATCACAAACGTCGGAGGCGATGGTGATGTGCGTGCTGTTTCAATCAA
AGGGTCAAGAACTGATTGG
back to top