CB290343
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14 Identity = 52/176 (29.55%), Postives = 79/176 (44.89%), Query Frame = 3 Query: 63 GWTDDHATFYXXXXXXXXXXXXXXY-GNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKG---GIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGS 557 GW+ AT+Y Y G++ + + AA S +++ +G CG+C+++KC +P C + V T+ C GG C HFDLS F +A+ AG +PV Y RVPC +G R + Y+ VL+ + GDGD+ AV + S Sbjct: 37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLC---------PGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQS 202
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12 Identity = 46/173 (26.59%), Postives = 78/173 (45.09%), Query Frame = 3 Query: 66 WTDDHATFYXXXXXXXXXXXXXXY-GNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFT----INGHSYFNLVLITNVGGDGDVRAVSI 548 W++ AT+Y Y G ++ + + AA S +++ +G+ CG+C+++KC + C + V T+ C GG C HFDLS F +A AG++ + Y RVPC+ GG++ T + + + VL+ GDGD+ V + Sbjct: 37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CSGNPVTVVLTDEC---------PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCN-WGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVEL 198
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11 Identity = 53/180 (29.44%), Postives = 75/180 (41.67%), Query Frame = 3 Query: 63 GWTDDHATFYXXXXXXXXXXXXXXYGNLYSEG-YGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKG-GIRFTIN--GHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569 GW AT+Y Y + + + AA S +L+ G CGAC+E+KC + C V T+ C GG C HFD+S +A+ AGI+ V YRRVPC G I F ++ + ++ VLI GDGD+ AV + + W Sbjct: 63 GWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CSGQPATVVITDEC---------PGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGW 232 The following BLAST results are available for this feature:
BLAST of CB290343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290343 ID=CB290343; Name=CB290343; organism=Citrus sinensis; type=EST; length=569bpback to top |