CB290343

Overview
NameCB290343
Unique NameCB290343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 52/176 (29.55%), Postives = 79/176 (44.89%), Query Frame = 3
Query:   63 GWTDDHATFYXXXXXXXXXXXXXXY-GNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKG---GIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGS 557
            GW+   AT+Y              Y G++    + +  AA S +++ +G  CG+C+++KC  +P  C    + V  T+ C          GG C     HFDLS   F  +A+         AG +PV Y RVPC  +G     R     + Y+  VL+ +  GDGD+ AV +  S
Sbjct:   37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLC---------PGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQS 202          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 46/173 (26.59%), Postives = 78/173 (45.09%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXY-GNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFT----INGHSYFNLVLITNVGGDGDVRAVSI 548
            W++  AT+Y              Y G ++   + +  AA S +++ +G+ CG+C+++KC  +   C    + V  T+ C          GG C     HFDLS   F  +A          AG++ + Y RVPC+  GG++ T    +  +  +  VL+    GDGD+  V +
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CSGNPVTVVLTDEC---------PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCN-WGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVEL 198          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 53/180 (29.44%), Postives = 75/180 (41.67%), Query Frame = 3
Query:   63 GWTDDHATFYXXXXXXXXXXXXXXYGNLYSEG-YGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKG-GIRFTIN--GHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            GW    AT+Y              Y     +  + +  AA S +L+  G  CGAC+E+KC  +   C      V  T+ C          GG C     HFD+S      +A+         AGI+ V YRRVPC   G  I F ++   + ++  VLI    GDGD+ AV +  +   W
Sbjct:   63 GWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CSGQPATVVITDEC---------PGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGW 232          
The following BLAST results are available for this feature:
BLAST of CB290343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXB14_ORYSJ4.166e-1429.55Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB15_ORYSJ8.686e-1226.59Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ1.482e-1129.44Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290343 ID=CB290343; Name=CB290343; organism=Citrus sinensis; type=EST; length=569bp
TGGAATTTNTTGGGTTGATGTTGTTGGGGATTNTTTATTTAGTGTNATGT
GTTTATGCCCAAGGATGGACTGATGATCATGCNACTTTTTATGGTGGGGG
TGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTATACA
GCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCACTTTTCAAC
AATGGCATGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCC
AAGATGGTGCCGTGCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCG
CTCGAAATAATGCTCTCCCAAACAATGCCGGTGGTTGGTGCAATCTTCAC
CAGCAACATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTA
CAAAGCTGGGATAGTACCTGTGTCTTACAGAAGGGTTCCATGCAGTAGGA
AGGGAGGTATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTAGTC
CTAATCACAAACGTCGGAGGCGATGGTGATGTGCGTGCTGTTTCAATCAA
AGGGTCAAGAACTGATTGG
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