CB290352

Overview
NameCB290352
Unique NameCB290352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290352_ssr259 microsatellite CB290352_ssr259:259..270. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.402e-56
Identity = 107/141 (75.89%), Postives = 125/141 (88.65%), Query Frame = -1
Query:  301 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMALV 723
            KDWRGGRG +QNII SSTGAAKAVGKV+P+L+GKLTGMAFRVPTPNVSVVDLT RL K  SY+D+KAA+K ASEG L+G+LGYT++DVVS DF GD+RSSIFDAKAGI LS +F+K+VSWYD E+GYS RV+DLI+HM  V
Sbjct:  190 KDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKV 330          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.402e-56
Identity = 110/138 (79.71%), Postives = 120/138 (86.96%), Query Frame = -1
Query:  310 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHM 723
            KDWRGGR  S NII SSTGAAKAVGKVLP+LNGKLTGMAFRVPT +VSVVDLT RLAK A+YE +KAAIK  SEG+LKGILGY DED+VS DF GDSRSSIFDAKAGI L+ +F+KLVSWYD EWGYS RV+DLI HM
Sbjct:  164 KDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTVDVSVVDLTVRLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHM 301          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.402e-56
Identity = 111/141 (78.72%), Postives = 121/141 (85.82%), Query Frame = -1
Query:  301 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMALV 723
            KDWRGGR  S NII SSTGAAKAVGKVLP LNGKLTGM+FRVPT +VSVVDLT RL K A+YE +KAAIK  SEG LKGILGYT++DVVS DFVGDSRSSIFDAKAGI L+ +F+KLVSWYD EWGYS RV+DLI HMA V
Sbjct:  196 KDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASV 336          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.391e-56
Identity = 110/152 (72.37%), Postives = 126/152 (82.89%), Query Frame = -1
Query:  268 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMALVAAHN*TVKLVC 723
            KDWRGGR  S NII SSTGAAKAVGKVLP LNGKLTGM+FRVPT +VSVVDLT RL K A+YE +KAAIK  SEG +KGILGYT++DVVS DFVGD+RSSIFDAKAGI L+ +F+KLVSWYD EWGYS+RV+DLI HM+   +   +V L C
Sbjct:  196 KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKTTSKLDSVALAC 347          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.122e-56
Identity = 105/141 (74.47%), Postives = 126/141 (89.36%), Query Frame = -1
Query:  301 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMALV 723
            KDWRGGRG +QNII SSTGAAKAVGKV+P+L+GKLTGMAFRVPTP+VSVVDLT RL K  SY+D+KAA+K ASEG L+G LGYT++DVVS+DF+GD+RSSIFDAKAGI LS +F+K+VSWYD E+GYS RV+DL++HM  V
Sbjct:  190 KDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKV 330          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.078e-56
Identity = 105/139 (75.54%), Postives = 123/139 (88.49%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGRG +QNII SSTGAAKAVGKV+P+LNGKLTGMAFRVPT NVSVVDLTCRL K ASYE +KAA+K ASEG LKGILGYT++++VS+D  G++ SSIFDAKAGI L+ +F+KLVSWYD EWGYS RVLDL+ ++A
Sbjct:  193 KDWRGGRGAAQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTSNVSVVDLTCRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVA 331          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.956e-56
Identity = 106/141 (75.18%), Postives = 122/141 (86.52%), Query Frame = -1
Query:  301 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMALV 723
            KDWR GRG   NII +STGAAKAVGKV+P LNGKLTGMAFRVP P+VSVVDLT RL K ASYED+KAAIK ASEGSLKGILGYT+++VVS DF+GDS SSIFDAKAGI L+ +F+KL+SWYD E+GYS RV+DL+ H+A V
Sbjct:  192 KDWRAGRGAGANIIPASTGAAKAVGKVIPHLNGKLTGMAFRVPNPDVSVVDLTVRLEKSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAKV 332          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.956e-56
Identity = 107/139 (76.98%), Postives = 121/139 (87.05%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGR  + NII S+TGAAKAVGKVLP+LNGKLTGMAFRVPT +VSVVDLT RL K ASY+ +K AIK ASEG +KGILGYT++DVVS DF+ DSRSSIFDAKAGI LS +F+KLV+WYD EWGYSNRV+DLI HMA
Sbjct:  198 KDWRGGRSAATNIIPSATGAAKAVGKVLPELNGKLTGMAFRVPTTDVSVVDLTVRLEKPASYDAIKTAIKEASEGQMKGILGYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDLIVHMA 336          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.643e-55
Identity = 107/139 (76.98%), Postives = 120/139 (86.33%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGR  S NII SSTGAAKAVGKVLP LNGKLTGM+FRVPT +VSVVDLT RL K A+Y+++K AIK  SEG LKGILGYT++DVVS DFVGD+RSSIFDAKAGI LS  F+KLVSWYD EWGYS+RV+DLI HM+
Sbjct:  198 KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMS 336          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.643e-55
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGRG SQNII SSTGAAKAVGKVLP+LNGKLTGMAFRVPTPNVSVVDLT RL K A+YE +KAA+K A+EG +KG+LGYT++DVVS DF G+  +S+FDAKAGI L+ +F+KLVSWYD E GYSN+VLDLI H++
Sbjct:  192 KDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
The following BLAST results are available for this feature:
BLAST of CB290352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3P_PANVR1.402e-5675.89Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3PC_HORVU1.402e-5679.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA1.402e-5678.72Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU2.391e-5672.37Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3P_HOMAM3.122e-5674.47Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_PODAN4.078e-5675.54Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_RHIMI6.956e-5675.18Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3PC_PHYPA6.956e-5676.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH2.643e-5576.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SHIFL2.643e-5574.82Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290352 ID=CB290352; Name=CB290352; organism=Citrus sinensis; type=EST; length=723bp
TAAGCAGGGTTGATGGTTGCATACACCTTATGGTAAAATGGGGTTCATTA
TGTAGATGACTAGGATGCCCAGAATCCAAACAAAGATGGTAGTAGTGGAA
TGAACTCCATACACTTTGAATATTCTATTCCATTATTTTAAAATTTGCAT
CAAGGGATGTCCAAAGTTCATATTGCGAGTCACTCAGAACAAAACGCAGA
ATCACTATCAAATTTTTAACTACTCTTTCAATCTAACCCAAAAGCATGCA
CTAAAATTGCAGCAGCAGCAAACCAATTTTACTGTTTAGTTGTGGGCCGC
TACCAATGCCATGTGCTCGATGAGGTCCAACACTCGATTGCTGTATCCCC
ACTCGGTGTCATACCATGACACAAGCTTCATGAAGGATGCACTCAATCCA
ATCCCAGCCTTCGCATCAAATATACTTGACCTCGAGTCTCCAACAAAGTC
ATTAGAGACAACATCCTCATCTGTGTATCCAAGAATGCCTTTCAGTGAAC
CCTCCGATGCATACTTTATGGCGGCTTTGACATCTTCATAGGAAGCACCC
TTTGCAAGTCGACAAGTCAAGTCCACAACAGACACATTAGGAGTTGGGAC
ACGGAAGGCCATGCCAGTAAGCTTTCCGTTGAGATCTGGAAGAACTTTAC
CAACAGCCTTGGCAGCACCAGTTGAACTAAGAATGATATTTTGTGAAACT
CCACGCCCTCCTCTCCAATCCTT
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