CB290352

Overview
NameCB290352
Unique NameCB290352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290352_ssr259 microsatellite CB290352_ssr259:259..270. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.604e-52
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = -1
Query:  301 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYAS-EGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMALV 723
            KDWRGGR  +QNII SSTGAAKAVGKV+P LNGKLTGM+ RVPT NVSVVDLTCR  K  +YED+K  IK AS EG LKGILGYT++D+VS D +GD+ SSIFDAKAGI L+  F+KLVSWYD EWGYS RV+DLI +++ V
Sbjct:  194 KDWRGGRTAAQNIIPSSTGAAKAVGKVIPSLNGKLTGMSMRVPTANVSVVDLTCRTEKAVTYEDIKKTIKAASEEGELKGILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISKV 335          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.604e-52
Identity = 103/139 (74.10%), Postives = 118/139 (84.89%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGR  S NII SSTGAAKAVGKVLP LNGKLTGMAFRVPT +VSVVDLT +L K  +Y+++KAAIK ASEG LKGILGYT++ VVS DF+GD+ SSIFDA AGI LS  F+KLVSWYD E+GYS RV+DL+EH+A
Sbjct:  191 KDWRGGRTASGNIIPSSTGAAKAVGKVLPQLNGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKAAIKAASEGKLKGILGYTEDAVVSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.604e-52
Identity = 103/140 (73.57%), Postives = 120/140 (85.71%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEG-SLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGRG   NII SSTGAAKAVGKV+P+LNGKLTGMAFRVPTP+VSVVDLT RL K ASY+++KA IK ASE   LKGILGYT++ VVS DFVGD+ SSIFDAKAGI LS +F+KL+SWYD E+GYS RV+DL+ ++A
Sbjct:  194 KDWRGGRGAGANIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKATIKKASESEELKGILGYTEDQVVSTDFVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.094e-52
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            K WR GRG +QNII +STGAAKAVGKV+P+LNGKLTGMAFRVPTPNVSVVDLTCRL K A Y+D+K  +K ASEG LKGILGYT++ VVS DF  D+ SS FDA AGI L+  F+KL+SWYD E+GYSNRV+DL+ HMA
Sbjct:  192 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 330          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.094e-52
Identity = 101/139 (72.66%), Postives = 117/139 (84.17%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            K WR GRG +QNII +STGAAKAVGKV+P+LNGKLTGMAFRVPTPNVSVVDLTCRL K A YED+K  +K ASEG LKGILGYT++ VVS DF  DS SS FDA AGI L+ +F+KL+SWYD E+GYSNRV+DL+ +MA
Sbjct:  192 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMA 330          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.094e-52
Identity = 101/139 (72.66%), Postives = 117/139 (84.17%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            K WR GRG +QNII +STGAAKAVGKV+P+LNGKLTGMAFRVPTPNVSVVDLTCRL K A Y+D+K  +K A++G LKGILGYT++ VVS DF GDS SS FDA AGI L+  F+KLVSWYD E+GYSNRV+DL+ HMA
Sbjct:  192 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMA 330          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.735e-52
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            K WR GRG +QNII +STGAAKAVGKV+P+LNGKLTGMAFRVPTPNVSVVDLTCRL K A Y+D+K  +K ASEG LKGILGYT++ VVS DF  D+ SS FDA AGI L+  F+KL+SWYD E+GYSNRV+DL+ HMA
Sbjct:  192 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMA 330          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.735e-52
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = -1
Query:  295 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMALVAA 723
            KDWRGGR  +QNII SSTGAAKAVGKV+PDLNGKLTGM+ RVPT NVSVVDLT R+ KGASY+++K  +K ASEG L GIL YT+++VVS+D  G+  SSIFDAKAGI L+ +F+KLVSWYD EWGYS RVLDLI ++A V A
Sbjct:  193 KDWRGGRTAAQNIIPSSTGAAKAVGKVIPDLNGKLTGMSMRVPTANVSVVDLTVRIEKGASYDEIKEVVKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAKVDA 335          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.735e-52
Identity = 98/138 (71.01%), Postives = 120/138 (86.96%), Query Frame = -1
Query:  310 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHM 723
            K WR GRG +QNII +STGAAKAVGKV+P+LNGKLTGMAFRVPTPNVSVVDLT RL K A+Y+++KA +  AS+G +KGIL YT+E+VVS DFVGD+ SS+FDAKAGI L+  F+KL+SWYD E+GYSNRV+DLI++M
Sbjct:  191 KLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTVRLGKSATYDEIKAKVLEASQGPMKGILDYTEEEVVSTDFVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.572e-52
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = -1
Query:  295 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMALVAA 723
            KDWRGGR  +QNII SSTGAAKAVGKV+PDLNGKLTGMA RVPT NVSVVDLT R+ KGA+Y+++K  IK ASEG L GIL YT+++VVS+D  G+  SSIFDAKAGI L+ +F+KLVSWYD EWGYS RVLDLI +++ V A
Sbjct:  193 KDWRGGRTAAQNIIPSSTGAAKAVGKVIPDLNGKLTGMAMRVPTANVSVVDLTARIEKGATYDEIKEVIKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISKVDA 335          
The following BLAST results are available for this feature:
BLAST of CB290352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3P_ASPOR1.604e-5271.13Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_ASHGO1.604e-5274.10Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P3_RHIRA1.604e-5273.57Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P_FELCA2.094e-5271.94Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_CRIGR2.094e-5272.66Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_CHICK2.094e-5272.66Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_SPECI2.735e-5271.94Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_SORMA2.735e-5270.63Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_GLOMM2.735e-5271.01Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_NEUCR3.572e-5270.63Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290352 ID=CB290352; Name=CB290352; organism=Citrus sinensis; type=EST; length=723bp
TAAGCAGGGTTGATGGTTGCATACACCTTATGGTAAAATGGGGTTCATTA
TGTAGATGACTAGGATGCCCAGAATCCAAACAAAGATGGTAGTAGTGGAA
TGAACTCCATACACTTTGAATATTCTATTCCATTATTTTAAAATTTGCAT
CAAGGGATGTCCAAAGTTCATATTGCGAGTCACTCAGAACAAAACGCAGA
ATCACTATCAAATTTTTAACTACTCTTTCAATCTAACCCAAAAGCATGCA
CTAAAATTGCAGCAGCAGCAAACCAATTTTACTGTTTAGTTGTGGGCCGC
TACCAATGCCATGTGCTCGATGAGGTCCAACACTCGATTGCTGTATCCCC
ACTCGGTGTCATACCATGACACAAGCTTCATGAAGGATGCACTCAATCCA
ATCCCAGCCTTCGCATCAAATATACTTGACCTCGAGTCTCCAACAAAGTC
ATTAGAGACAACATCCTCATCTGTGTATCCAAGAATGCCTTTCAGTGAAC
CCTCCGATGCATACTTTATGGCGGCTTTGACATCTTCATAGGAAGCACCC
TTTGCAAGTCGACAAGTCAAGTCCACAACAGACACATTAGGAGTTGGGAC
ACGGAAGGCCATGCCAGTAAGCTTTCCGTTGAGATCTGGAAGAACTTTAC
CAACAGCCTTGGCAGCACCAGTTGAACTAAGAATGATATTTTGTGAAACT
CCACGCCCTCCTCTCCAATCCTT
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