CB290360

Overview
NameCB290360
Unique NameCB290360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.237e-80
Identity = 138/220 (62.73%), Postives = 180/220 (81.82%), Query Frame = -3
Query:  200 KQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS---QESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 850
            +QKKAHL+EIQVNGG++ QKVD+A    EKQ+ +D VF +DEMID IGVT+G G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++   +  ++  TEFD T+K ITPMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  174 RQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 5.533e-80
Identity = 145/222 (65.32%), Postives = 176/222 (79.28%), Query Frame = -3
Query:  209 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 874
            QIRK   LKQKKAHLMEIQVNGGSVA KVDFA   FEK I ID++F+KDEMID+I VTKG G++GV +RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT  N K++++GK S E  +A T+FD ++K ITPMGGF  YG V  DY+++KG   G KKRV+TLR++L  QTSR A E+++LK+IDTSSKFGHG FQT +EK  + G LK
Sbjct:  166 QIRKTP-LKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEG-NASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 7.227e-80
Identity = 141/227 (62.11%), Postives = 177/227 (77.97%), Query Frame = -3
Query:  206 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 874
            Q+ K+K L QKKAH++EIQVNGGS+ +KV+FA   FEK + +  VF ++E+ID+IGVTKGKG+ GV+ RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKKIY++G+A  E      +  TEFD TEK I PMGGF HYG+V  ++L++KGC  GP+KR +TLR+S+  QT R ALE+I LKFIDTSSKFGHG  QT ++K KY+G  K+
Sbjct:  168 QVHKLK-LTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 1.233e-79
Identity = 143/221 (64.71%), Postives = 179/221 (81.00%), Query Frame = -3
Query:  209 LKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 853
            L+QKKAHLMEIQVNGG+VA+K+D+A    E+Q+P++ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  173 LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 1.233e-79
Identity = 138/220 (62.73%), Postives = 179/220 (81.36%), Query Frame = -3
Query:  200 KQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKAS---QESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 850
            +QKKAHL+EIQ+NGG++ QKVD+A    EKQI +D VF +DEMID IGVTKG G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N KIY++GK++   +  ++  TEFD T+K I PMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  174 RQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.684e-79
Identity = 142/222 (63.96%), Postives = 175/222 (78.83%), Query Frame = -3
Query:  209 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 874
            QIRK   LKQKKAHLMEIQ+NGGSVA KV+F +G FEK + ID++F+KDE+ID+I VTKG G+ GV  RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N KIY++GK   E  SA TE D T+K ITPMGGF  YG +N D++++KG   G KKRV+TLR+S+   TSR ALE+++LK+IDTSS+FGHG FQT  EK ++ G LK
Sbjct:  166 QIRKTP-LKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKGDAED-SAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.044e-78
Identity = 141/222 (63.51%), Postives = 176/222 (79.28%), Query Frame = -3
Query:  209 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 874
            Q+RK   L QKKAHL EIQ+NGGSV+ KVD+A   FEK + +D+VF+++EMID++ VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y++GK   E+++A TEFDRT+K ITPMGGF HYG +N D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  165 QVRKTP-LSQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKGDDEANAA-TEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 289.656 bits (740), Expect = 1.507e-77
Identity = 135/225 (60.00%), Postives = 175/225 (77.78%), Query Frame = -3
Query:  209 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 865
            K+   +QKKAH+ME+Q+NGG+VA+KV +A    EKQ+P+ +VF ++E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKKIY++G+           ++A T +D T+K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR ALE I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  169 KLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.570e-77
Identity = 141/222 (63.51%), Postives = 174/222 (78.38%), Query Frame = -3
Query:  209 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 874
            Q+RK   L QKKAHL EIQ+NGGS+++KVD+A   FEK + +D+VF+++EMID I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KIY++GK   E ++A T FDRT+K I PMGGF HYG+VN D++++KG   G KKRVVTLR+SL   TSR A+EE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  165 QVRKTP-LVQKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKGDDEGNAA-TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 288.5 bits (737), Expect = 3.357e-77
Identity = 140/222 (63.06%), Postives = 173/222 (77.93%), Query Frame = -3
Query:  209 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 874
            QIRK   L QKKAHL EIQ+NGGS+++KVD+A   FEK + +D+VF+++EMID I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N KIY++GK   E++ A T FDRT+K ITPMGGF HYG +  D++++KGC  G +KR+VTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQT  EK  + G LK
Sbjct:  165 QIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGA-TSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
The following BLAST results are available for this feature:
BLAST of CB290360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_CAEEL4.237e-8062.7360S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_ASPFU5.533e-8065.3260S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_DICDI7.227e-8062.1160S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_MACFA1.233e-7964.7160S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_CAEBR1.233e-7962.7360S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_NEUCR4.684e-7963.9660S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_KLULA1.044e-7863.5160S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3L_BOVIN1.507e-7760.0060S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_CANGA2.570e-7763.5160S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_YEAST3.357e-7763.0660S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290360 ID=CB290360; Name=CB290360; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAAGCCCAAAATACCGTAAGATGTATTAACGCGC
AAAAAAGAAACCATGCACAAATGAAGTTTCCAAGAACTGCCAGTGTAGCC
ATAGCCATATTAATTCAAAATAGAGACTAGAATGACCAAAAATCTTAGAT
GTTCAAAACTACCCTGAAACCAAAGGCAATCTCTTCTTCAACTTGGCCAA
AATCAAGCCTTGAGCCTTCCATAGTACTTGGCCTTCTCCTGCGTTGTCTG
GAACCGACCATGGCCGAACTTGGAGGATGTGTCAATGAACTTGAGCTTAA
TCTCCTCCAATGCAAGCCTAGACGTCTGCTTCAGTAGGGACTGCCTTAAC
GTCACAACACGCTTCTTAGGTCCAACACAGCAGCCCTTGATCAGCAGGTA
ATCTTCATTGACTACACCATAGTGGGGGAAGCCTCCCATTGGGGTGATAT
CCTTCTCCGTCCTGTCAAATTCAGTCATGGCAGAATGAGACTCCTGGCTG
GCCTTCCCAAGCTTGTAAATTTTCTTGTTCATCTCTGTACGGTGATGGTA
GCCGTTCTGCCCAGCTCTAGCAACGGTAAAGGAGACCCTAGCCGGATGCC
AGGCACCAATACAAGCAACCTTGCGTAGACCACGGTGAGTCTTACGAGGG
AGACGAGTAACACCCCAACGAGTAACAACACCCTCATATCCCTTACCTTT
GGTCACACCAATAATGTCAATCATCTCATCTTTCTGGAACACAGCATCAA
TAGGAATCTGTTTCTCGAAGAAACCATAAGCAAAGTCAACCTTCTGGGCA
ACTGATCCACCATTGACCTGGATCTCCATCAGATGGGCCTTCTTCTGCTT
CAGTCCCTTCATTTTTCTGATCTGGG
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