CB290360

Overview
NameCB290360
Unique NameCB290360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.131e-32
Identity = 80/204 (39.22%), Postives = 113/204 (55.39%), Query Frame = -3
Query:  263 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 868
            R + G+ +K   +MEI V G SV +++  A G    Q+ +  +F   E ID+  VTKGKG +G V RWG+    RK  R   LR V  +G WHPAR+S+ V + GQ GYH RTE NK+I  +G                  DITP GGF  YGVV  +Y+LIKG   GP KR+V +R++ ++  +  A +  ++ ++   SK G
Sbjct:  146 RLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKRWGIMLQKRKHSRTGKLRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIG--------------TNGTDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.928e-32
Identity = 73/179 (40.78%), Postives = 107/179 (59.78%), Query Frame = -3
Query:  335 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 865
            K  G+ +KK  +ME ++ G  V ++ ++A     ++I    VF + E++D+  +TKGKG++GVV RWGVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK+I K+G+  +E              +TP GGF +YGVV  DY++I G   GPKKR++ +R ++
Sbjct:  154 KKAGVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.289e-32
Identity = 72/203 (35.47%), Postives = 115/203 (56.65%), Query Frame = -3
Query:  263 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 865
            ++ G+ +K   LME ++ GG +A++ +FA     K + I  VF   E++D+  +TKG G +G V RWG+    RK  R  +K  V  +G W+P R+ + V + GQ GYH RTE NK+I K+G  ++E              ITP GGF HYG++  DY+++KG   GP KR+V +R ++  +   +  +  ++ ++ T SK G
Sbjct:  151 EVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.296e-32
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = -3
Query:  263 GLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 856
            G+ +K   +ME ++ GG+V + +D+A     K+I +  VF +  +ID+I VTKGKG++G V RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ K+G+  +E              ITP GGF HYGV+   Y+L+ G   GP KR++ +R ++  +  +   + + + ++ T+SK G
Sbjct:  148 GVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.611e-32
Identity = 75/204 (36.76%), Postives = 116/204 (56.86%), Query Frame = -3
Query:  260 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 865
            K   L +KK  ++EI++ G +++  + +A     K++ I+ VF   E ID + +TKGKG++G V RWG+  +  +  ++G+ R    IG W P R+ +TV  AGQ G+H RTE NK+I K+G+   E              I P GGF +YGVV  +Y+L+KG   GP KR+V LR+++     +  L E  L ++ T SK G+
Sbjct:  146 KDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.021e-30
Identity = 75/176 (42.61%), Postives = 103/176 (58.52%), Query Frame = -3
Query:  344 MKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 862
            + G+ +K   L+EI + G  SV ++++FA     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE NK++ K+G+   E              ITP  GFPHYGVV   Y+LI+G   G +KR+V LR
Sbjct:  153 LSGIGKKTPELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.252e-30
Identity = 81/204 (39.71%), Postives = 109/204 (53.43%), Query Frame = -3
Query:  263 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKD-ITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 865
            K+  + +KK  ++E  + G SV  K+++A     K+I    VFQ+ E  D I  TKGKG +G V R+GV     K  R    R V  IG W P R  +TVA  GQ GYH RTE NKK+ K+G             D +E D I P GGF  YG V  +Y+L+KG   GP KR+V LR+ +   + ++   EI   +I T+SK G
Sbjct:  148 KLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGKGVQGPVKRFGVRIQYGKAARSGIERHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPEI--SYISTTSKQG 336          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.859e-30
Identity = 74/202 (36.63%), Postives = 110/202 (54.46%), Query Frame = -3
Query:  263 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 862
            M G+ +K   LMEI+V GG +A++ ++A+G   K+I +  V +     DI  +T GKG +G V RWGVT   RK   G   R V  +G W+P  V + V ++GQ GY  RTE NK+I K+G+   E              ITP GGF +YGV+   Y++IKG   GP KR++ +R ++  +     +    ++F+   SK G
Sbjct:  152 MSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKRWGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.528e-29
Identity = 71/179 (39.66%), Postives = 99/179 (55.31%), Query Frame = -3
Query:  335 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 865
            ++ G+ +K   LME+++ GGS+  ++ +A     K+I I    +  E +D+  VT GKG EG V RWGV    RK  RG +K  +  +G WHP  V + V + GQ GY  RTE NK+I K+G    E              ITP GGF HYG+V   Y+LIKG   GP KR+V +R ++
Sbjct:  151 ELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI 315          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.996e-29
Identity = 73/177 (41.24%), Postives = 103/177 (58.19%), Query Frame = -3
Query:  344 KMKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 865
            ++ G+ +K   ++EI V G  S+ ++++FA     K +    VF   +++D+I VTKGKGY+GVV R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK+I K+G    E              ITP  GFPHYGV+   Y+L++G   G +KR+V LR
Sbjct:  152 RLSGIGKKTPEVLEIPVGGVPSIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE--------------ITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313          
The following BLAST results are available for this feature:
BLAST of CB290360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_METTP1.131e-3239.2250S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_METKA1.928e-3240.7850S ribosomal protein L3P OS=Methanopyrus kandleri... [more]
RL3_UNCMA3.289e-3235.4750S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_ARCFU4.296e-3237.0050S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_META35.611e-3236.7650S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_PYRAE4.021e-3042.6150S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_METST5.252e-3039.7150S ribosomal protein L3P OS=Methanosphaera stadtm... [more]
RL3_METB66.859e-3036.6350S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_METMJ1.528e-2939.6650S ribosomal protein L3P OS=Methanoculleus marisn... [more]
RL3_PYRCJ1.996e-2941.2450S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290360 ID=CB290360; Name=CB290360; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAAGCCCAAAATACCGTAAGATGTATTAACGCGC
AAAAAAGAAACCATGCACAAATGAAGTTTCCAAGAACTGCCAGTGTAGCC
ATAGCCATATTAATTCAAAATAGAGACTAGAATGACCAAAAATCTTAGAT
GTTCAAAACTACCCTGAAACCAAAGGCAATCTCTTCTTCAACTTGGCCAA
AATCAAGCCTTGAGCCTTCCATAGTACTTGGCCTTCTCCTGCGTTGTCTG
GAACCGACCATGGCCGAACTTGGAGGATGTGTCAATGAACTTGAGCTTAA
TCTCCTCCAATGCAAGCCTAGACGTCTGCTTCAGTAGGGACTGCCTTAAC
GTCACAACACGCTTCTTAGGTCCAACACAGCAGCCCTTGATCAGCAGGTA
ATCTTCATTGACTACACCATAGTGGGGGAAGCCTCCCATTGGGGTGATAT
CCTTCTCCGTCCTGTCAAATTCAGTCATGGCAGAATGAGACTCCTGGCTG
GCCTTCCCAAGCTTGTAAATTTTCTTGTTCATCTCTGTACGGTGATGGTA
GCCGTTCTGCCCAGCTCTAGCAACGGTAAAGGAGACCCTAGCCGGATGCC
AGGCACCAATACAAGCAACCTTGCGTAGACCACGGTGAGTCTTACGAGGG
AGACGAGTAACACCCCAACGAGTAACAACACCCTCATATCCCTTACCTTT
GGTCACACCAATAATGTCAATCATCTCATCTTTCTGGAACACAGCATCAA
TAGGAATCTGTTTCTCGAAGAAACCATAAGCAAAGTCAACCTTCTGGGCA
ACTGATCCACCATTGACCTGGATCTCCATCAGATGGGCCTTCTTCTGCTT
CAGTCCCTTCATTTTTCTGATCTGGG
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