CB290360
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.131e-32 Identity = 80/204 (39.22%), Postives = 113/204 (55.39%), Query Frame = -3 Query: 263 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 868 R + G+ +K +MEI V G SV +++ A G Q+ + +F E ID+ VTKGKG +G V RWG+ RK R LR V +G WHPAR+S+ V + GQ GYH RTE NK+I +G DITP GGF YGVV +Y+LIKG GP KR+V +R++ ++ + A + ++ ++ SK G Sbjct: 146 RLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKRWGIMLQKRKHSRTGKLRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIG--------------TNGTDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.928e-32 Identity = 73/179 (40.78%), Postives = 107/179 (59.78%), Query Frame = -3 Query: 335 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 865 K G+ +KK +ME ++ G V ++ ++A ++I VF + E++D+ +TKGKG++GVV RWGVT RKT R R + IG P+RV +TV AGQ GYH RTE NK+I K+G+ +E +TP GGF +YGVV DY++I G GPKKR++ +R ++ Sbjct: 154 KKAGVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 3.289e-32 Identity = 72/203 (35.47%), Postives = 115/203 (56.65%), Query Frame = -3 Query: 263 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 865 ++ G+ +K LME ++ GG +A++ +FA K + I VF E++D+ +TKG G +G V RWG+ RK R +K V +G W+P R+ + V + GQ GYH RTE NK+I K+G ++E ITP GGF HYG++ DY+++KG GP KR+V +R ++ + + + ++ ++ T SK G Sbjct: 151 EVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 4.296e-32 Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = -3 Query: 263 GLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 856 G+ +K +ME ++ GG+V + +D+A K+I + VF + +ID+I VTKGKG++G V RWGV L K R R+V +G W+P V +TV +AGQ G+H RTE NK++ K+G+ +E ITP GGF HYGV+ Y+L+ G GP KR++ +R ++ + + + + + ++ T+SK G Sbjct: 148 GVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 5.611e-32 Identity = 75/204 (36.76%), Postives = 116/204 (56.86%), Query Frame = -3 Query: 260 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 865 K L +KK ++EI++ G +++ + +A K++ I+ VF E ID + +TKGKG++G V RWG+ + + ++G+ R IG W P R+ +TV AGQ G+H RTE NK+I K+G+ E I P GGF +YGVV +Y+L+KG GP KR+V LR+++ + L E L ++ T SK G+ Sbjct: 146 KDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.021e-30 Identity = 75/176 (42.61%), Postives = 103/176 (58.52%), Query Frame = -3 Query: 344 MKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 862 + G+ +K L+EI + G SV ++++FA K + VF +++D+I VTKGKGY+GV+ R+GVT LPR K +G R+ IG PA V FT R GQ G+H RTE NK++ K+G+ E ITP GFPHYGVV Y+LI+G G +KR+V LR Sbjct: 153 LSGIGKKTPELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.252e-30 Identity = 81/204 (39.71%), Postives = 109/204 (53.43%), Query Frame = -3 Query: 263 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKD-ITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 865 K+ + +KK ++E + G SV K+++A K+I VFQ+ E D I TKGKG +G V R+GV K R R V IG W P R +TVA GQ GYH RTE NKK+ K+G D +E D I P GGF YG V +Y+L+KG GP KR+V LR+ + + ++ EI +I T+SK G Sbjct: 148 KLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGKGVQGPVKRFGVRIQYGKAARSGIERHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPEI--SYISTTSKQG 336
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 6.859e-30 Identity = 74/202 (36.63%), Postives = 110/202 (54.46%), Query Frame = -3 Query: 263 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 862 M G+ +K LMEI+V GG +A++ ++A+G K+I + V + DI +T GKG +G V RWGVT RK G R V +G W+P V + V ++GQ GY RTE NK+I K+G+ E ITP GGF +YGV+ Y++IKG GP KR++ +R ++ + + ++F+ SK G Sbjct: 152 MSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKRWGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.528e-29 Identity = 71/179 (39.66%), Postives = 99/179 (55.31%), Query Frame = -3 Query: 335 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 865 ++ G+ +K LME+++ GGS+ ++ +A K+I I + E +D+ VT GKG EG V RWGV RK RG +K + +G WHP V + V + GQ GY RTE NK+I K+G E ITP GGF HYG+V Y+LIKG GP KR+V +R ++ Sbjct: 151 ELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI 315
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.996e-29 Identity = 73/177 (41.24%), Postives = 103/177 (58.19%), Query Frame = -3 Query: 344 KMKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLR 865 ++ G+ +K ++EI V G S+ ++++FA K + VF +++D+I VTKGKGY+GVV R+GVT LPR K +G R+ IG PA + FT R GQ G+H RTE NK+I K+G E ITP GFPHYGV+ Y+L++G G +KR+V LR Sbjct: 152 RLSGIGKKTPEVLEIPVGGVPSIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE--------------ITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313 The following BLAST results are available for this feature:
BLAST of CB290360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290360 ID=CB290360; Name=CB290360; organism=Citrus sinensis; type=EST; length=876bpback to top |