CB290360
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28 Identity = 76/206 (36.89%), Postives = 116/206 (56.31%), Query Frame = -3 Query: 263 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 874 Q RK+ L +K L+EIQ+ GG ++D+A K+I I VF++ ++ID++GVTKGKG+ GV+ R+ V LPR K +G RK+ G S+T + GQ G+H RTE NK+I K+G K+I P GGF YG+V Y+L++G +G KKR + LR+++ + S + K+ +++ SK G Sbjct: 164 QPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28 Identity = 76/206 (36.89%), Postives = 116/206 (56.31%), Query Frame = -3 Query: 263 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 874 Q RK+ L +K L+EIQ+ GG ++D+A K+I I VF++ ++ID++GVTKGKG+ GV+ R+ V LPR K +G RK+ G S+T + GQ G+H RTE NK+I K+G K+I P GGF YG+V Y+L++G +G KKR + LR+++ + S + K+ +++ SK G Sbjct: 164 QPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28 Identity = 76/206 (36.89%), Postives = 116/206 (56.31%), Query Frame = -3 Query: 263 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 874 Q RK+ L +K L+EIQ+ GG ++D+A K+I I VF++ ++ID++GVTKGKG+ GV+ R+ V LPR K +G RK+ G S+T + GQ G+H RTE NK+I K+G K+I P GGF YG+V Y+L++G +G KKR + LR+++ + S + K+ +++ SK G Sbjct: 164 QPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28 Identity = 76/206 (36.89%), Postives = 116/206 (56.31%), Query Frame = -3 Query: 263 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 874 Q RK+ L +K L+EIQ+ GG ++D+A K+I I VF++ ++ID++GVTKGKG+ GV+ R+ V LPR K +G RK+ G S+T + GQ G+H RTE NK+I K+G K+I P GGF YG+V Y+L++G +G KKR + LR+++ + S + K+ +++ SK G Sbjct: 164 QPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28 Identity = 71/206 (34.47%), Postives = 113/206 (54.85%), Query Frame = -3 Query: 263 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---LKFIDTSSKFG 865 ++ G+ +K LMEI+V GGS ++ D+A + + ++ + + DI G+TKGKG++G V R+G+T RK R R + +G W P V + V GQ G+ RTE NK+I K+G+ + E I P GGF HYG+V +Y+LIKG GP KR+V +R + +R+ ++I+ ++++ SK G Sbjct: 147 ELTGVPKKVPDLMEIRVAGGSAQERFDYALSILGTDVDMKSLLSEGQFADITGITKGKGFQGAVKRFGITLRKRKHARTKKERHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_THEAC (50S ribosomal protein L3P OS=Thermoplasma acidophilum GN=rpl3p PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.420e-28 Identity = 68/203 (33.50%), Postives = 107/203 (52.71%), Query Frame = -3 Query: 263 RKMKGLKQKKAHLMEIQVNGG-SVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 868 + + G+ KK + E+++ GG SV +++++A KQI + + +D++ +TKGKG+ G V R+GV LPRK + R + +G WHP V TV +AGQ G+ RT N ++ K G + I GGF HYG V DY+L+ G G KR++ +R ++ +EE+KL++I SK G Sbjct: 142 KDVPGIPSKKPEIFELRIGGGNSVKERLEYAKNHLGKQITFTDFSKPGKFVDVVSITKGKGFTGHVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYGNKEEVD------------SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESKQG 330
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.420e-28 Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = -3 Query: 263 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 874 Q + + L +KK ++E+QV GG + ++++ K + + VF++ ++IDIIGVTKGKG++GVV R+GV LPR K +G RKV GA P+ V + GQ GYH RTE NK+I K+ E I P GGF +YG+V YL+I+G +G KKR + LR + + S + K+ +++ S+ G Sbjct: 156 QPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RPSWIPQSAPKITYVNLYSQQG 343
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 8.384e-28 Identity = 71/180 (39.44%), Postives = 103/180 (57.22%), Query Frame = -3 Query: 341 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQ 874 Q RK+ L +K L+EIQ+ GG ++D+A K+I I VF++ ++ID++GVTKGKG+ GV+ R+ V LPR K +G RK+ G S+T + GQ G+H RTE NK+I K+G K+I P GGF YG+V Y+L++G +G KKR + LR+ Sbjct: 164 QPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 8.384e-28 Identity = 69/204 (33.82%), Postives = 110/204 (53.92%), Query Frame = -3 Query: 263 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 868 + + G+ +K +ME ++ + K +++ + + VF+ ++D +T GKG +G V RWG+ + K R LR+V +GA++P+RVS+ V + GQ GYH RTE NK+I K+G +E +TP GGF +YG+V DY+LIKG GP KR++ LR + + + L E + +I SK G Sbjct: 150 KSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVDTAAITIGKGTQGPVKRWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.430e-27 Identity = 67/180 (37.22%), Postives = 102/180 (56.67%), Query Frame = -3 Query: 335 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 862 + + +K+ +ME +V GGS++ +VDFA + + + VF+ E D+ G+TKGKG +G V RWGV + K R R++ +G W+P+RV TV + GQ GYH RTE+NK++ LG + D++P GGF +YG V+ Y L+KG GP KR+V R ++ Sbjct: 151 LSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAV 314 The following BLAST results are available for this feature:
BLAST of CB290360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290360 ID=CB290360; Name=CB290360; organism=Citrus sinensis; type=EST; length=876bpback to top |