CB290360

Overview
NameCB290360
Unique NameCB290360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28
Identity = 76/206 (36.89%), Postives = 116/206 (56.31%), Query Frame = -3
Query:  263 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 874
            Q RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK+I K+G                 K+I P GGF  YG+V   Y+L++G  +G KKR + LR+++  + S +     K+ +++  SK G
Sbjct:  164 QPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28
Identity = 76/206 (36.89%), Postives = 116/206 (56.31%), Query Frame = -3
Query:  263 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 874
            Q RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK+I K+G                 K+I P GGF  YG+V   Y+L++G  +G KKR + LR+++  + S +     K+ +++  SK G
Sbjct:  164 QPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28
Identity = 76/206 (36.89%), Postives = 116/206 (56.31%), Query Frame = -3
Query:  263 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 874
            Q RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK+I K+G                 K+I P GGF  YG+V   Y+L++G  +G KKR + LR+++  + S +     K+ +++  SK G
Sbjct:  164 QPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28
Identity = 76/206 (36.89%), Postives = 116/206 (56.31%), Query Frame = -3
Query:  263 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 874
            Q RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK+I K+G                 K+I P GGF  YG+V   Y+L++G  +G KKR + LR+++  + S +     K+ +++  SK G
Sbjct:  164 QPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.882e-28
Identity = 71/206 (34.47%), Postives = 113/206 (54.85%), Query Frame = -3
Query:  263 KMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---LKFIDTSSKFG 865
            ++ G+ +K   LMEI+V GGS  ++ D+A       + + ++  + +  DI G+TKGKG++G V R+G+T   RK  R    R +  +G W P  V + V   GQ G+  RTE NK+I K+G+ + E              I P GGF HYG+V  +Y+LIKG   GP KR+V +R +     +R+  ++I+   ++++   SK G
Sbjct:  147 ELTGVPKKVPDLMEIRVAGGSAQERFDYALSILGTDVDMKSLLSEGQFADITGITKGKGFQGAVKRFGITLRKRKHARTKKERHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_THEAC (50S ribosomal protein L3P OS=Thermoplasma acidophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.420e-28
Identity = 68/203 (33.50%), Postives = 107/203 (52.71%), Query Frame = -3
Query:  263 RKMKGLKQKKAHLMEIQVNGG-SVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 868
            + + G+  KK  + E+++ GG SV +++++A     KQI      +  + +D++ +TKGKG+ G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+  RT  N ++ K G   +               I   GGF HYG V  DY+L+ G   G  KR++ +R    ++     +EE+KL++I   SK G
Sbjct:  142 KDVPGIPSKKPEIFELRIGGGNSVKERLEYAKNHLGKQITFTDFSKPGKFVDVVSITKGKGFTGHVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYGNKEEVD------------SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESKQG 330          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.420e-28
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = -3
Query:  263 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 874
            Q + +  L +KK  ++E+QV GG +  ++++      K + +  VF++ ++IDIIGVTKGKG++GVV R+GV  LPR  K  +G RKV   GA  P+      V + GQ GYH RTE NK+I K+     E              I P GGF +YG+V   YL+I+G  +G KKR + LR  +  + S +     K+ +++  S+ G
Sbjct:  156 QPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RPSWIPQSAPKITYVNLYSQQG 343          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.384e-28
Identity = 71/180 (39.44%), Postives = 103/180 (57.22%), Query Frame = -3
Query:  341 QIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQ 874
            Q RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK+I K+G                 K+I P GGF  YG+V   Y+L++G  +G KKR + LR+
Sbjct:  164 QPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.384e-28
Identity = 69/204 (33.82%), Postives = 110/204 (53.92%), Query Frame = -3
Query:  263 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 868
            + + G+ +K   +ME  ++   +  K +++       + +  VF+   ++D   +T GKG +G V RWG+  +  K  R   LR+V  +GA++P+RVS+ V + GQ GYH RTE NK+I K+G   +E              +TP GGF +YG+V  DY+LIKG   GP KR++ LR  +  +  +  L E  + +I   SK G
Sbjct:  150 KSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVDTAAITIGKGTQGPVKRWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337          
BLAST of CB290360 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.430e-27
Identity = 67/180 (37.22%), Postives = 102/180 (56.67%), Query Frame = -3
Query:  335 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 862
            +  + +K+  +ME +V GGS++ +VDFA    +   +  +  VF+  E  D+ G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  LG                + D++P GGF +YG V+  Y L+KG   GP KR+V  R ++
Sbjct:  151 LSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAV 314          
The following BLAST results are available for this feature:
BLAST of CB290360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_SULIM2.882e-2836.8950S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIL2.882e-2836.8950S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIK2.882e-2836.8950S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIA2.882e-2836.8950S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_METLZ2.882e-2834.4750S ribosomal protein L3P OS=Methanocorpusculum la... [more]
RL3_THEAC6.420e-2833.5050S ribosomal protein L3P OS=Thermoplasma acidophi... [more]
RL3_SULTO6.420e-2836.7150S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]
RL3_SULSO8.384e-2839.4450S ribosomal protein L3P OS=Sulfolobus solfataric... [more]
RL3_METAC8.384e-2833.8250S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_NATPD1.430e-2737.2250S ribosomal protein L3P OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290360 ID=CB290360; Name=CB290360; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAAGCCCAAAATACCGTAAGATGTATTAACGCGC
AAAAAAGAAACCATGCACAAATGAAGTTTCCAAGAACTGCCAGTGTAGCC
ATAGCCATATTAATTCAAAATAGAGACTAGAATGACCAAAAATCTTAGAT
GTTCAAAACTACCCTGAAACCAAAGGCAATCTCTTCTTCAACTTGGCCAA
AATCAAGCCTTGAGCCTTCCATAGTACTTGGCCTTCTCCTGCGTTGTCTG
GAACCGACCATGGCCGAACTTGGAGGATGTGTCAATGAACTTGAGCTTAA
TCTCCTCCAATGCAAGCCTAGACGTCTGCTTCAGTAGGGACTGCCTTAAC
GTCACAACACGCTTCTTAGGTCCAACACAGCAGCCCTTGATCAGCAGGTA
ATCTTCATTGACTACACCATAGTGGGGGAAGCCTCCCATTGGGGTGATAT
CCTTCTCCGTCCTGTCAAATTCAGTCATGGCAGAATGAGACTCCTGGCTG
GCCTTCCCAAGCTTGTAAATTTTCTTGTTCATCTCTGTACGGTGATGGTA
GCCGTTCTGCCCAGCTCTAGCAACGGTAAAGGAGACCCTAGCCGGATGCC
AGGCACCAATACAAGCAACCTTGCGTAGACCACGGTGAGTCTTACGAGGG
AGACGAGTAACACCCCAACGAGTAACAACACCCTCATATCCCTTACCTTT
GGTCACACCAATAATGTCAATCATCTCATCTTTCTGGAACACAGCATCAA
TAGGAATCTGTTTCTCGAAGAAACCATAAGCAAAGTCAACCTTCTGGGCA
ACTGATCCACCATTGACCTGGATCTCCATCAGATGGGCCTTCTTCTGCTT
CAGTCCCTTCATTTTTCTGATCTGGG
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