CB290361

Overview
NameCB290361
Unique NameCB290361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 302.368 bits (773), Expect = 1.895e-81
Identity = 149/250 (59.60%), Postives = 185/250 (74.00%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 788
            MSHRK+E PRHG LGFLPRKRA+  R +VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++TPP+         +TPRGLRSL TVWA+HL++EV+RRFYKNW                 D     I+ +L ++KKY +V+RVL HTQIRK   L QKKAHL EIQ+NGGS+++KVD+A   FEK + +D+VF+++EMID I VTKG G+EGV  RWG  +LPRKTHRGLR
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLR 247          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 7.201e-81
Identity = 145/250 (58.00%), Postives = 186/250 (74.40%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 788
            MSHRK+E PRHG LGFLPRKRA+  RG+VK+FPKDD +KP  LT+FLGYKAGM+ IVRD+++PGSK HK+E  EAVT+++TPP+         +TPRGLRSL TVWA+HL++EV+RRFYKNW                 +  + D   +L ++KKY +V+RVL HTQ+RK   L QKKAHL EIQ+NGGSV+ KVD+A   FEK + +D+VF+++EMID++ VTKG G+EGV  RWG  +LPRKTHRGLR
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLDRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAENGAQVD--RELARIKKYASVVRVLVHTQVRKTP-LSQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHRWGTKKLPRKTHRGLR 247          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 295.819 bits (756), Expect = 1.774e-79
Identity = 142/250 (56.80%), Postives = 179/250 (71.60%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 788
            MSHRKF  PRHG LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+ETPPL          TPRGLRS  T++A+HL++E RRRFYK+W                  DGKK +Q     MKKYC VIRV+ HTQ+ K+   +QKKAH+MEIQ+NGG+VA+KV +A    EKQ+P+ +VF + E+ID+I VTKG+G +GV +RW   +LPRKTH+GLR
Sbjct:    1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLR 249          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 295.434 bits (755), Expect = 2.317e-79
Identity = 141/250 (56.40%), Postives = 180/250 (72.00%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 788
            MSHRKF  PRHG LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+ETPPL          TPRGLRS  T++A+HL++E RRRFYK+W                  DGKK +Q     MKKYC VIRV+ HTQ+ K+   +QKKAH+ME+Q+NGG+VA+KV +A    EKQ+P+ +VF ++E+ID+I VTKG+G +GV +RW   +LPRKTH+GLR
Sbjct:    1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKLPRKTHKGLR 249          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.036e-48
Identity = 109/251 (43.43%), Postives = 148/251 (58.96%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRD-VEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 788
            MS RKF  PRHGSL F PRKR+   R    AFP DD S+P  LT F+ YKAGMTH+VR   +   +K   +E  +AVT++E PP+         KT  GLR L  V A ++++ V RR + N                         ++++E +K+    +RVL  TQ   +KGL  KKAH+ EIQVNGGS+++KV++A G  EK+I I  VF  +E ID IGVTKGKG++G V R+GV + PRK+ +G+R
Sbjct:    1 MSCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKTQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMFGNRYASKESAGQFCKGSV--------CESRVEMIKERAHCVRVLVQTQPTLIKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFGVRKQPRKSRKGIR 243          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.216e-36
Identity = 101/255 (39.61%), Postives = 140/255 (54.90%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTP-RGLRSLCTVWAQHLNE-EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKV-DFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M  RK   PR GSLGF PRKRASR   +VK +P+ D  KP  L AFLGY+AGMTH+    ++PG     KE    VTI+ETPP+           P RG  SL   WAQ   E E++RR                    +TD   K ++ +L+K +     +R++A +Q +   GL +KK  L+EI+V G S   K+ D+A       I ++ VF++ +++D+I VTKGKG++GV+ RWGV  LPR  K  +G R
Sbjct:    1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI-------------STLGSFDTDKMLKSLEERLDKAED----VRLIAASQPKLAGGLSKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSR 237          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.926e-31
Identity = 84/252 (33.33%), Postives = 130/252 (51.59%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK   PR GS G  PRKRAS      +++P    ++P +L  F+GYK GM+HI    +KP S  + KE    V++IETPP+           P+G  +  T +   ++E++ +   +                 E   GK D   ++         +RVL  TQ + +  L +KK  ++E+QV GG +  ++++      K + +  VF++ ++IDIIGVTKGKG++GVV R+GV  LPR  K  +G R
Sbjct:    1 MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQR-------KVTRLKIDKEKMKGKLD---EINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSR 241          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.926e-31
Identity = 88/254 (34.65%), Postives = 129/254 (50.79%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG-LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGK-KDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK   PR GS G  PRKRA       K +P  +  +P +L  F+GYKAGMTH+    +KP S  + KE    VTI+E+PP+            +G L  L   WA    EE   ++ K                 + D  K K+    ++K     T +R+L  TQ   +  L +K+  ++EIQ+ GGS+  ++++      KQIP+  VF++ ++ DIIGVTKGKG++GV+ R+ V   PR  K  +G R
Sbjct:    1 MGHRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVIKRYSVVEFPRWHKHRKGSR 240          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.597e-30
Identity = 79/243 (32.51%), Postives = 126/243 (51.85%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            K+  PR GSL F PRKRA     +++A+P+ D     R+  F GYKAGMTH+V   ++  S  + +E    VT+IETPP+         KT  G++    VW+ +L++ + RR                         + D++     ++   + +RV+ +TQ   + G+ +K   +ME ++ GG+V + +D+A     K+I +  VF +  +ID+I VTKGKG++G V RWGV  L  K  R
Sbjct:    2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHAR 221          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.786e-30
Identity = 79/234 (33.76%), Postives = 122/234 (52.14%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S    +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK + A L+ + +  T +R + HT   K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGKG++G V RWG+
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNSSQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRKL-----------------TLAKKEEKKTVDA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGI 215          
The following BLAST results are available for this feature:
BLAST of CB290361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_YEAST1.895e-8159.6060S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_KLULA7.201e-8158.0060S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3L_HUMAN1.774e-7956.8060S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3L_BOVIN2.317e-7956.4060S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_ENCCU8.036e-4843.4360S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_AERPE9.216e-3639.6150S ribosomal protein L3P OS=Aeropyrum pernix GN=r... [more]
RL3_SULTO8.926e-3133.3350S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]
RL3_SULAC8.926e-3134.6550S ribosomal protein L3P OS=Sulfolobus acidocalda... [more]
RL3_ARCFU2.597e-3032.5150S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_METMP5.786e-3033.7650S ribosomal protein L3P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290361 ID=CB290361; Name=CB290361; organism=Citrus sinensis; type=EST; length=788bp
GCACTAGGGCAACGCAAGAGTTCTAAGTGCCGAGTAGGATGTCTCATCGT
AAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTCTCCCAAGGAAGAG
AGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGACCCAT
CAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAAAGCTGGAATGACC
CATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGCTGCACAAGAAAGA
AACATGTGAAGCAGTAACTATTATTGAAACACCACCCCTGGTGGTTGTTG
GGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCGTTCTCTCTGCACT
GTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAAGGTTTTACAAGAA
CTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTATACAAAGAAGTATG
AAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCTGGAGAAAATGAAG
AAATACTGCACCGTGATTCGTGTTTTGGCCCATACCCAGATCAGAAAAAT
GAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATCCAGGTCAATG
GTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTTCTTCGAGAAA
CAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGACATTAT
TGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACTCGTTGGGGTG
TTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGC
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