CB290361

Overview
NameCB290361
Unique NameCB290361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.556e-30
Identity = 83/236 (35.17%), Postives = 124/236 (52.54%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQA--QLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+  ++E+ R+                     T   K++I+    L+ + +    +RV+ HT   K  G+ +KK  ++EI+V G SVA+K+ +A     K + I+ VF+  E ID + VTKGKG++G V RWGV
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------------TVTKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGV 215          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.556e-30
Identity = 83/236 (35.17%), Postives = 124/236 (52.54%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQA--QLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+  ++E+ R+                     T   K++I+    L+ + +    +RV+ HT   K  G+ +KK  ++EI+V G SVA+K+ +A     K + I+ VF+  E ID + VTKGKG++G V RWGV
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------------TVTKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGV 215          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.556e-30
Identity = 80/234 (34.19%), Postives = 123/234 (52.56%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK   A L+ + +  T +RV+ HT   K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGKG++G V RWG+
Sbjct:    4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDNDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRVIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGI 215          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.556e-30
Identity = 80/231 (34.63%), Postives = 124/231 (53.68%), Query Frame = 3
Query:   63 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG-LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            PR GSL F PRKRA R   +++++P++D     RL AF  YKAGM+H     + P S    +E    +TI+E PP+         +  R  L +L  VWA +L++E+ R+                       + +K ++  LE +K     +RVL HT   K+  L +KK  ++EI++ G  + +++++A     KQ+ I  VFQ+ E++D IGVTKGKG++G V RWGV
Sbjct:    8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGV 216          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.750e-29
Identity = 79/234 (33.76%), Postives = 122/234 (52.14%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK   A L+ + +  T +R + HT   K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGKG++G V RWG+
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKL-----------------TLAKKEEKKTADA-LDAVVEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGI 215          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.898e-29
Identity = 87/251 (34.66%), Postives = 127/251 (50.60%), Query Frame = 3
Query:   33 SRMSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG--LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV---IRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 767
            SR    K   PR GS+G  PRKRA+    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++ PPL           P     RS+  VWA  L   +RR                      T   K D+  Q++K++++  V   +R L  TQ   + G+ +K   L+EI + G  SV +++ FA     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR
Sbjct:    2 SRAMGLKINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL--------------------TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQPH-LSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPR 230          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.898e-29
Identity = 79/234 (33.76%), Postives = 122/234 (52.14%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK   A L+ + +  T +R + HT   K  G+ +KK  ++EI++ G SVA+++ +A     K + I  VF+  E+ID + +TKGKG++G V RWG+
Sbjct:    4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGI 215          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.091e-28
Identity = 82/250 (32.80%), Postives = 124/250 (49.60%), Query Frame = 3
Query:   36 RMSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV--IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            R   R    PR GSL F PRKRASR   +++++P ++     R+  F GYKAGMTH +   + P S    +E    VTI++ PP+          TP G R +   WA+   E    R +                     DG+     ++E++     V  IRV+  TQ +K  G+ +KK  +ME ++ G  V ++ ++A     ++I    VF + E++D+  +TKGKG++GVV RWGVT   RKT R
Sbjct:    3 RGGRRNPGRPRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVFT-----------------VPKDGEAGDLDKIEELVDEGIVEEIRVIVATQPKKA-GVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQR 231          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.861e-28
Identity = 84/245 (34.29%), Postives = 123/245 (50.20%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG--LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV---IRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 767
            K   PR GS+G  PRKRA+    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE    VT+++ PPL           P     RS+  VWA  L   +RR                      T   K D+  Q++K++++  V   +R L  TQ   + G+ +K   L+EI + G  SV +++ FA     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRRVL--------------------TLPEKADVDKQMKKVEEFKDVAVDVRALVATQPH-LSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPR 226          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.861e-28
Identity = 79/241 (32.78%), Postives = 122/241 (50.62%), Query Frame = 3
Query:   63 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            PR GS+GF PR RA+    +  ++P DD  +P  L  F GYKAGM+H+V   ++P S    +E    VT++ETPP+          TP G R L  VW   ++E++ R                     ++ D + DI+  L+  +     +RV+ HT    +  + +K+  +ME +V GGS++ +VDFA    +   +  +  VF+  E  D+ G+TKGKG +G V RWGV +   K  R
Sbjct:    7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSL--------------SVPEEQSGDIEGDIRTALD--EGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHAR 229          
The following BLAST results are available for this feature:
BLAST of CB290361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_METVS7.556e-3035.1750S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA7.556e-3035.1750S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METM77.556e-3034.1950S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METJA7.556e-3034.6350S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_METM53.750e-2933.7650S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_PYRIL4.898e-2934.6650S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_METM64.898e-2933.7650S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METKA1.091e-2832.8050S ribosomal protein L3P OS=Methanopyrus kandleri... [more]
RL3_THENV1.861e-2834.2950S ribosomal protein L3P OS=Thermoproteus neutrop... [more]
RL3_NATPD1.861e-2832.7850S ribosomal protein L3P OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290361 ID=CB290361; Name=CB290361; organism=Citrus sinensis; type=EST; length=788bp
GCACTAGGGCAACGCAAGAGTTCTAAGTGCCGAGTAGGATGTCTCATCGT
AAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTCTCCCAAGGAAGAG
AGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGACCCAT
CAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAAAGCTGGAATGACC
CATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGCTGCACAAGAAAGA
AACATGTGAAGCAGTAACTATTATTGAAACACCACCCCTGGTGGTTGTTG
GGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCGTTCTCTCTGCACT
GTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAAGGTTTTACAAGAA
CTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTATACAAAGAAGTATG
AAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCTGGAGAAAATGAAG
AAATACTGCACCGTGATTCGTGTTTTGGCCCATACCCAGATCAGAAAAAT
GAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATCCAGGTCAATG
GTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTTCTTCGAGAAA
CAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGACATTAT
TGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACTCGTTGGGGTG
TTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGC
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