CB290361

Overview
NameCB290361
Unique NameCB290361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.431e-28
Identity = 85/262 (32.44%), Postives = 130/262 (49.62%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK   PR GS G  PRKR+S      + +P+ +   P +L  F+GYK GMTH+    + P S  + KE    VT++E PP+            +G  ++ T  W+    +  ++ RR +                  + D+ KK        +L+ +K     I   R+L  TQ RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G R
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHS------------ISSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLVSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSR 249          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.175e-28
Identity = 84/245 (34.29%), Postives = 126/245 (51.43%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG--LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV---IRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 767
            K   PR GS+G  PRKRA+    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++ PPL           P     R++  VWA  L + + R                      T   K D+  QL+K++++  V   +R L  TQ   + G+ +K   L+EI + G  SV ++++FA     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASELPKFLHRVL--------------------TLPEKLDVDKQLKKVEEFRDVAVDVRALVATQPH-LSGIGKKTPELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTILPR 226          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.415e-28
Identity = 86/264 (32.58%), Postives = 134/264 (50.76%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWA----QHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK   PR GS G  PRKR+S      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E PP+            +G  ++ T  W+    Q L+   R R + ++               + D+ KK  +    ++L+ +K     I   R+L  TQ RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G R
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIRSFSSFL--------------KNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSR 249          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.415e-28
Identity = 75/239 (31.38%), Postives = 120/239 (50.21%), Query Frame = 3
Query:   63 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            PR GSL F PRKRA     +++++  D+ +    +  F GYKAGMTH++   ++P S     E    VT++E PP+             G+R    +WA++L++++ R                           +DI+++++++ +    IRVLAHT  R + G+ +K   +MEI V G SV +++  A G    Q+ +  +F   E ID+  VTKGKG +G V RWG+    RK  R
Sbjct:    7 PRRGSLAFSPRKRAKSEVPRIRSWVADERAG---MAGFAGYKAGMTHVIMIDDRPRSLTEGMEISVPVTVVEVPPMSVAALRVYEPYNGGIRPAGELWAENLSQDLERAI--------------TIPKARRGASLEDIESRVDELCE----IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKRWGIMLQKRKHSR 224          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_SULIY (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.073e-28
Identity = 84/262 (32.06%), Postives = 132/262 (50.38%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK   PR GS G  PRKR+S      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E PP+            +G  ++ T  W+    +  ++ RR +                  + D+ KK  +    ++L+ +K     I   R+L  TQ RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G R
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSR 249          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.073e-28
Identity = 84/262 (32.06%), Postives = 132/262 (50.38%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK   PR GS G  PRKR+S      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E PP+            +G  ++ T  W+    +  ++ RR +                  + D+ KK  +    ++L+ +K     I   R+L  TQ RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G R
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSR 249          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.073e-28
Identity = 84/262 (32.06%), Postives = 132/262 (50.38%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK   PR GS G  PRKR+S      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E PP+            +G  ++ T  W+    +  ++ RR +                  + D+ KK  +    ++L+ +K     I   R+L  TQ RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G R
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSR 249          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.073e-28
Identity = 84/262 (32.06%), Postives = 132/262 (50.38%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK   PR GS G  PRKR+S      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E PP+            +G  ++ T  W+    +  ++ RR +                  + D+ KK  +    ++L+ +K     I   R+L  TQ RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G R
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSR 249          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.073e-28
Identity = 84/262 (32.06%), Postives = 132/262 (50.38%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK   PR GS G  PRKR+S      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E PP+            +G  ++ T  W+    +  ++ RR +                  + D+ KK  +    ++L+ +K     I   R+L  TQ RK+  L +K   L+EIQ+ GG    ++D+A     K+I I  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G R
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSR 249          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.576e-27
Identity = 83/245 (33.88%), Postives = 124/245 (50.61%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG--LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV---IRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 767
            K   PR GS+G  PRKRA+    +V+ +P  +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++ PPL           P    LRS   VWA  L + + R                      T   K D+  Q++++++Y  V   +R L  TQ   + G+ +K   L+EI + G  ++ +++ FA     K +    VF   +++D+I VTKGKG++GVV R+GVT LPR
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPDVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLFVWGFRLYTLDPTNGYLRSAAEVWAGELPKHLSRVL--------------------TLPEKVDVDKQMKQVEEYRDVAVEVRALVATQPH-LSGIGKKTPELLEIPIGGVPNIDERIKFAISLLGKTVSPKDVFSPGQLVDVIAVTKGKGWQGVVKRFGVTILPR 226          
The following BLAST results are available for this feature:
BLAST of CB290361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_SULSO2.431e-2832.4450S ribosomal protein L3P OS=Sulfolobus solfataric... [more]
RL3_PYRAE3.175e-2834.2950S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_SULIA5.415e-2832.5850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_METTP5.415e-2831.3850S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_SULIY7.073e-2832.0650S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIN7.073e-2832.0650S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIM7.073e-2832.0650S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIL7.073e-2832.0650S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIK7.073e-2832.0650S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_PYRAR1.576e-2733.8850S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290361 ID=CB290361; Name=CB290361; organism=Citrus sinensis; type=EST; length=788bp
GCACTAGGGCAACGCAAGAGTTCTAAGTGCCGAGTAGGATGTCTCATCGT
AAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTCTCCCAAGGAAGAG
AGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGACCCAT
CAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAAAGCTGGAATGACC
CATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGCTGCACAAGAAAGA
AACATGTGAAGCAGTAACTATTATTGAAACACCACCCCTGGTGGTTGTTG
GGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCGTTCTCTCTGCACT
GTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAAGGTTTTACAAGAA
CTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTATACAAAGAAGTATG
AAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCTGGAGAAAATGAAG
AAATACTGCACCGTGATTCGTGTTTTGGCCCATACCCAGATCAGAAAAAT
GAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATCCAGGTCAATG
GTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTTCTTCGAGAAA
CAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGACATTAT
TGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACTCGTTGGGGTG
TTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGC
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