CB290361

Overview
NameCB290361
Unique NameCB290361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.058e-27
Identity = 78/238 (32.77%), Postives = 119/238 (50.00%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMK---KYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            +   PR GS+ F PRKRA+R   +VK++P+ D+P     L A  GYKAGMTH++    +  S     E    VTI+E PPL         KT RGL++L  V A    +++RR+                      DD   D +A +EK++   +Y   +RV+ HT  R +  + +KK  + E  + G +  +K ++A     K +    +F +   +D I VTKGKG++G V RWG+
Sbjct:    3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKL-----------------TPPADD--YDQEAAIEKIRSNMEYVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGI 216          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.688e-27
Identity = 85/242 (35.12%), Postives = 118/242 (48.76%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFY---KNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV-----IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            K   PR GSL F PRKRA     ++K +PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E PPL         +   GL +   VW   LN+ V+RR     KN+                   G++D +A+L +++          +R+L HTQ   +K   +KK  +ME  + G  V  K ++A     K+I    V  + E++D+I VTKGKG +G V RWGV
Sbjct:    3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKDSE---VRMLGFAGYKAGMTHILMIDDSPGLT-KGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKNY-------------------GEEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGV 219          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.820e-27
Identity = 83/242 (34.30%), Postives = 125/242 (51.65%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTP-RGLR-SLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 767
            K   PR GS+G  PRKRA+    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++ PPL           P  G + ++   W      ++RR                     E  D +K ++A LE+ +     +RVL  TQ R + G+ +K   ++EI V G  S+ ++++FA     K +    VF   +++D+I VTKGKGY+GVV R+GVT LPR
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVAAVRLYTLDPTNGYKVAVGEAWVSEPPADLRR----------------VLTLPEKFDTEKQLKA-LEEYRDVAVDVRVLVATQPR-LSGIGKKTPEVLEIPVGGVPSIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVKRFGVTILPR 226          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METS5 (50S ribosomal protein L3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.334e-26
Identity = 79/255 (30.98%), Postives = 123/255 (48.24%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLC-TVWAQ--HLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK   PR GS G  PRKR+       +++P+ +   P  L  F+GYK GMTHI    E   S +  KE    VT++ETPP+            RG  S+   VW       + + RR                    + +   KDI++ LE +  +    R+L  TQ   +  L +K   ++E+Q+ GG+   ++++        + +  VF++ +++DIIGVTKG G++GV+ R+GV  LPR  K  +G R
Sbjct:    1 MGHRKLSSPRRGSAGLRPRKRSEELLPSPRSYPEVNLPNPVTL-GFVGYKVGMTHIFMIDEDRSSSMFGKEIYVPVTVLETPPIYVLALRAYGLNNRGEHSVMGEVWGDLGDFGKFITRRI-----------RGLKIDKEKKEHQLKDIESNLESVSYF----RLLVSTQPHLIPALGKKTPDIVEVQIGGGNTKNQLEYGLKLLGNTLSVRDVFKEGQLMDIIGVTKGHGFQGVIKRYGVQELPRWHKHRKGSR 239          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.742e-26
Identity = 82/242 (33.88%), Postives = 114/242 (47.11%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFY--KNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK 770
            K   PR GSL F PRKRA     K K++P+   +    L  F GYK GMTH++   +   S    KE    VTIIE P +         K   G  +L  +WA+ L+ ++ RR    KN+               ++   KK     L         I  LA+TQ   M G+ +K   LMEI+V GG +A++ ++A+G   K+I +  V +     DI  +T GKG +G V RWGVT   RK
Sbjct:    3 KINRPRRGSLAFSPRKRAQSPIPKYKSWPEHSGAPA--LLGFAGYKVGMTHVLMVDDHKDSPTEGKEIMVPVTIIEIPTMKVAALRVYTKDTYGKHALTEIWAEPLDSQLSRRVTSPKNY---------------DSTAAKKKYSDALAA--GLVAEIYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKRWGVTLRKRK 225          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_STAMF (50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.971e-26
Identity = 87/296 (29.39%), Postives = 144/296 (48.65%), Query Frame = 3
Query:   39 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFP------------------KDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTP-RGLRSLCTVWAQHLN--------------------EEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKY-CTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLR 788
            M HRK+  PRHGSLG  PRKRA++   +++++P                  K    KP  L  ++ YKAGM+H +   ++P +    KE    VT+++ PP+           P  GL S   VW   +                     +++ R++ K                  ++ G K ++     +LE++K      IRV+A T I  + G+ +KK  ++EI++ GG++++++D+A       + +D VF++ + IDIIGVTKGKG++GV+ R+GV  LPR  K  +G R
Sbjct:    1 MGHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVWRSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKG---LRKVNPGLVKPEPHSEYGFKFLENNWKEKLERLKAAELADIRVIAST-IPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSR 291          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 119.013 bits (297), Expect = 2.971e-26
Identity = 79/241 (32.78%), Postives = 115/241 (47.72%), Query Frame = 3
Query:   63 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            PR GSLGF PRKR++    +  ++P DD     +   F GYKAGMTH+V   ++P S     E    VT+IETPP+          TP G R L  VW    + E+ R                     + D  ++ I+   E        +R++ HT    +  + +KK  +ME +V GGSV+ ++D A    E   +  ++ +F+  E  D+ GVTKGKG +G V RWGV +   K  R
Sbjct:    7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-------------DVPEDHDPDAAEEQIRDAHEAGD--LGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHAR 230          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.881e-26
Identity = 79/239 (33.05%), Postives = 115/239 (48.12%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV-----IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            K   PR GSL + PRKRA     +++ +PKD      R+  F GYKAGMTHI+   ++PG     KE    VT++E PPL         +   GL +   VW   LN+ V+RR                      D  ++  QA+L +++          +R+L HTQ   +K   +KK  +ME  + G  V  K D+A     K++    V  + E++D+I VTKGKG +G V RWG+
Sbjct:    3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKDSE---VRMLGFAGYKAGMTHILMIDDRPGLT-KGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRI----------------KTLPKDYNEEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGI 219          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 5.069e-26
Identity = 80/242 (33.06%), Postives = 110/242 (45.45%), Query Frame = 3
Query:   63 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKM-KKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ETPP+          TP G + L  VWA   +E + R                        D   D    +E +  +    IRV+ HT      G+ +K   +ME +V GG++A +++FA    E         VF+  E  D  G+TKGKG +G V RWGV +   K  R
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL-------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHAR 227          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.069e-26
Identity = 80/242 (33.06%), Postives = 110/242 (45.45%), Query Frame = 3
Query:   63 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKM-KKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ETPP+          TP G + L  VWA   +E + R                        D   D    +E +  +    IRV+ HT      G+ +K   +ME +V GG++A +++FA    E         VF+  E  D  G+TKGKG +G V RWGV +   K  R
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL-------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHAR 227          
The following BLAST results are available for this feature:
BLAST of CB290361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_METTH2.058e-2732.7750S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_THEGJ2.688e-2735.1250S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_PYRCJ7.820e-2734.3050S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]
RL3_METS51.334e-2630.9850S ribosomal protein L3P OS=Metallosphaera sedula... [more]
RL3_METB61.742e-2633.8850S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_STAMF2.971e-2629.3950S ribosomal protein L3P OS=Staphylothermus marin... [more]
RL3_HALMA2.971e-2632.7850S ribosomal protein L3P OS=Haloarcula marismortu... [more]
RL3_THEON3.881e-2633.0550S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_HALSA5.069e-2633.0650S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS35.069e-2633.0650S ribosomal protein L3P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290361 ID=CB290361; Name=CB290361; organism=Citrus sinensis; type=EST; length=788bp
GCACTAGGGCAACGCAAGAGTTCTAAGTGCCGAGTAGGATGTCTCATCGT
AAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTCTCCCAAGGAAGAG
AGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGACCCAT
CAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAAAGCTGGAATGACC
CATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGCTGCACAAGAAAGA
AACATGTGAAGCAGTAACTATTATTGAAACACCACCCCTGGTGGTTGTTG
GGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCGTTCTCTCTGCACT
GTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAAGGTTTTACAAGAA
CTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTATACAAAGAAGTATG
AAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCTGGAGAAAATGAAG
AAATACTGCACCGTGATTCGTGTTTTGGCCCATACCCAGATCAGAAAAAT
GAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATCCAGGTCAATG
GTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTTCTTCGAGAAA
CAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGACATTAT
TGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACTCGTTGGGGTG
TTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGC
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