CB290361

Overview
NameCB290361
Unique NameCB290361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.526e-22
Identity = 82/258 (31.78%), Postives = 117/258 (45.35%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHL---NEEVRRR---------FYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 788
            K   PR GSLGF PRKRA     +++++PK+      R+  F GYKAGMTHI+   ++PG   + KE    VTIIETPPL             GL +   V        N   + R         FYK                  T +  +    QLE M K   ++ V A    +      +KK  +ME  + G SV +K ++      K++ +  V ++ E++D+I VTKGKG +G V RWG+     K  +G R
Sbjct:    3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKE---TEVRMLGFAGYKAGMTHILMIDDEPG-LTNGKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKMTFYK-----LLERRIATLPKNYTQEMFEQKLGQLEDMIKEGEIVDVRAIVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRR 251          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.440e-22
Identity = 75/242 (30.99%), Postives = 115/242 (47.52%), Query Frame = 3
Query:   63 PRHGSLGFLPRKRASRHRGKVKAFPK--DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNE-EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            PR GSLG+ PR RA   + K++ + +  D P    ++  F+G+KAGM+HIV   ++P S     E    VTI+E P +          +P G + +   W   L   E      KN                +TD+    I A+L K K     +RV+  T   ++ G+ +K   LME ++ GG +A++ +FA     K + I  VF   E++D+  +TKG G +G V RWG+    RK  R
Sbjct:    7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQP----KIQGFVGFKAGMSHIVMVDDRPHSATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKN--------------GYKTDEQLAKI-AELVK-KGVVADLRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHAR 228          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22
Identity = 70/250 (28.00%), Postives = 110/250 (44.00%), Query Frame = 3
Query:   51 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFY--KNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKY-----CTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            K   PR GSL + PRKR+  H  + +++P+ D     +L  F GYK GMTH++   +   S     E    VTIIETP +         K   G  ++   W   L++++ RR    KN                       D+ A LEK++          IR++ +T    + G+ +K   +ME  V+G  V  K ++A       + I  VF   +++D+  +T G G +G V RWG+  +  K  R
Sbjct:    3 KGHRPRRGSLAYSPRKRSQSHIPRFRSWPESDAEP--KLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRLKTAKN----------------------PDVNASLEKLETLVESGRANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYAKTVLGTMVEISDVFDNGKIVDVAAITTGHGTQGPVKRWGINLMKNKHSR 228          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.374e-21
Identity = 68/241 (28.22%), Postives = 107/241 (44.40%), Query Frame = 3
Query:   63 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV--IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            P+ GSL F PRKRA  H  + +A+P  + +   RL  F GYK GMTH++   +   S     E    VTIIETP +         +   G +++  VWA  L+ E++RR                       D   +    + KM +   V  IR + +T  + + G+ +K   +ME  ++   +  K ++A       + I  VF+   +ID   +T GKG +G   RWG+  +  K  R
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-----------------PVPKGDNMAETLGNIGKMIEEGKVSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLIDTAAITIGKGTQGPAKRWGIQLMKGKHSR 228          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.156e-20
Identity = 61/230 (26.52%), Postives = 108/230 (46.96%), Query Frame = 3
Query:   63 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 752
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IETP +         +   G +++   WA  L+ E++RR                       +G ++I   +E+ +   + IR + +T  + + G+ +K   +ME  ++   +  K ++A       + +  VF+   ++D   +T GKG +G V RWG+
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYAKSILGNLVNVTDVFKNGTVVDTAAITIGKGTQGPVKRWGI 219          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.209e-19
Identity = 61/239 (25.52%), Postives = 111/239 (46.44%), Query Frame = 3
Query:   63 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 779
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IETP +         +   G +++  VWA  L+ E++RR                       +  ++I   +E+ +   + +R + +T  + + G+ +K   +ME  ++   +  K +++       + +  VF+   ++D   +T GKG +G V RWG+  +  K  R
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRRI-------------PIPAAGNQAEALENIGKLIEEGR--VSDVRAVIYTLPKSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVDTAAITIGKGTQGPVKRWGIQLMKGKHSR 228          
BLAST of CB290361 vs. ExPASy Swiss-Prot
Match: RL3_PIG (60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 3
Query:  651 QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 788
            ++P++ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLR
Sbjct:    1 RVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLR 46          
The following BLAST results are available for this feature:
BLAST of CB290361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_PYRFU1.526e-2231.7850S ribosomal protein L3P OS=Pyrococcus furiosus G... [more]
RL3_UNCMA4.440e-2230.9950S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_METBU7.574e-2228.0050S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_METBF8.374e-2128.2250S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_METMA4.156e-2026.5250S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METAC1.209e-1925.5250S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_PIG8.393e-1367.3960S ribosomal protein L3 (Fragment) OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290361 ID=CB290361; Name=CB290361; organism=Citrus sinensis; type=EST; length=788bp
GCACTAGGGCAACGCAAGAGTTCTAAGTGCCGAGTAGGATGTCTCATCGT
AAGTTTGAACACCCAAGACATGGTTCTTTAGGATTTCTCCCAAGGAAGAG
AGCATCCCGCCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGACCCAT
CAAAACCATGCAGATTAACTGCTTTTTTAGGCTACAAAGCTGGAATGACC
CATATTGTCAGAGATGTTGAAAAGCCAGGATCAAAGCTGCACAAGAAAGA
AACATGTGAAGCAGTAACTATTATTGAAACACCACCCCTGGTGGTTGTTG
GGGTCGTTGGTTATGTCAAGACACCCCGTGGGCTTCGTTCTCTCTGCACT
GTTTGGGCTCAGCATCTCAATGAGGAGGTTAGGAGAAGGTTTTACAAGAA
CTGGTGCAAATCGAAGAAGAAGGCCTTCACTAAGTATACAAAGAAGTATG
AAACTGATGATGGAAAGAAAGACATTCAGGCTCAGCTGGAGAAAATGAAG
AAATACTGCACCGTGATTCGTGTTTTGGCCCATACCCAGATCAGAAAAAT
GAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATCCAGGTCAATG
GTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTTCTTCGAGAAA
CAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGACATTAT
TGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACTCGTTGGGGTG
TTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGC
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