CB290372

Overview
NameCB290372
Unique NameCB290372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: NGDN_XENTR (Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 33/111 (29.73%), Postives = 65/111 (58.56%), Query Frame = 3 
Query:  297 DVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIKQLDENLPSELDEILK 629
            +++    P  V L   L D + ++   V  L  KV+      + G+ +LE+K  LLL Y Q +T  +L K+ G+ ++ +P I RLVE++ +L+K++ +D+ L  ++D++++
Sbjct:    6 EIILEDVPASVNLFRTLQDQVTKVTAHVQALTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVR 116
The following BLAST results are available for this feature:
BLAST of CB290372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NGDN_XENTR2.829e-1129.73Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290372 ID=CB290372; Name=CB290372; organism=Citrus sinensis; type=EST; length=809bp
GCACGTGGCTGCAATCAAGTGATGATGATTCCCCTGCTTTACAGGAACAA
TTGGTGGTAGAGGAGCTGGAAAAAAGAGCAACCTCTTTAGCAATGGAAGA
TTTTGGCCTTCAAGACGCTGGAGATAGTGAAGATAATGAAGATGAGAGTG
ACAAGGGATTAACCTTAGAAGAAATCTCGATTAAAGGGAAAAGTACAACA
AAGCCTTGGGCAAGCAAAGAAGCTGTAGATGATGCTGTTACAAGTTATGA
GGAGGTCAAGAAAGACTTGAATGCATTGTCAAAGGAGGAGCAAATGGATG
TGGTATACAGTTCTGCTCCAGAGTTGGTTGGTTTGCTGTCAGAACTGAAT
GATGCGCTTGAACAGCTTGAAATAAAAGTTAACCCGTTGTTAAACAAGGT
GAAAGAGCAGGAGATCATGCTGGAAGGTGGGATGCGCTATTTGGAGGTGA
AGCAACTTCTACTGCTGGCCTATTGCCAAGCCATAACCTTTTATCTTCTT
CTCAAGTCTGAAGGGGAGCCAGTTCGTGATCATCCTGTCATAGCTCGCCT
TGTAGAGATCAAGGGATTGCTGGATAAGATTAAACAACTCGATGAGAATC
TTCCATCTGAGTTAGATGAGATTTTGAAGAATGACCATTCAGCTGAAATT
GCGGCAAAGTTGGTTAGAGAGAATGCTAAAATGGCATCCAATTCTGCTGC
TGATAATCATCACAATTCATCTTCTGTCTCAGCTGATACAGATCATGGAG
CAGCGGCTTTAGATGTAAATGAATTGAAAATGGAGGACATTTTGAGGGAT
CATGATGAT
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