CB290383

Overview
NameCB290383
Unique NameCB290383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:6..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  437 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 679
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  437 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            E + FVGGL++ T +  L   FS YG I E  ++ DRET RSRGFGFVTF + +  +DA+ GMNG+ +DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  437 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 679
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  437 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 679
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.906e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = -3
Query:  437 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            E + F+GGL + T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+ +DGR I V++A
Sbjct:    4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.473e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  437 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            E + F+GGL + T +  L +AF+ YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.454e-15
Identity = 34/77 (44.16%), Postives = 56/77 (72.73%), Query Frame = -3
Query:  434 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 664
            R +VG L+W   D +L   FS  G ++E+++I DR++GRS+GFGFVT+   + +++AI+ ++G +LDGR I V+EA+
Sbjct:  205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  437 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 670
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +   DA+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = -3
Query:  434 VPISSFLLMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 712
            VP+SS +L +   +  + ++GGL+  T + SL +AFS++  + E++++ ++ TGRSRG+GFV F  E S   AI  MNGQ L+G NI+VN A+
Sbjct:   17 VPVSS-MLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = -3
Query:  434 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 664
            R +VG L+W   D +L   F+  G ++E+++I DR++GRS+GFGFVT    + ++ AI  +NG +LDGR I V+EA+
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334          
The following BLAST results are available for this feature:
BLAST of CB290383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CIRBP_RAT1.304e-1549.38Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_RANCA1.304e-1551.28Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_MOUSE1.304e-1549.38Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR1.304e-1549.38Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBB_XENLA2.906e-1550.00Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBA_XENLA6.473e-1548.72Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
ROC1_ARATH8.454e-1544.16Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RBM3_MOUSE1.104e-1448.72Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
RT19_ARATH1.883e-1443.0140S ribosomal protein S19, mitochondrial OS=Arabid... [more]
ROC2_ARATH1.883e-1444.1629 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bb05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bb05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290383 ID=CB290383; Name=CB290383; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTTTTTTTTTTTGAAAAGAACTGTAATTCATTTCCTCTTTTTTTT
CAAACAATTAACCAAACAGGGAGAACGAAACAACACAGGATAACAGGAAC
CGATCAAAACGACACATCATAACCCAAGGAAAATATCAAAACACGGAACG
GTAACATTCAACTCCTAATTTATCCTACAAAACCCTAGTTCCTCCAGCTA
CCGCCATCAAAAGCACCGCTCCTTGAGTATCGGGAACCACCATCACCGCC
ATATCCACCGTCACGGCTGTAACCACCTTCACGGCGGCCACCATATCCAC
CGCCGCCACCTCCGTATCCGCGGCTCCCACCGTATCCACCGCCACCACCA
CTTTCACGGCGTCCACCACCTCCATATCCACCACCGCCACGGCTTCCGTA
ACCGCCACCGCCACCGCCACCGCTTCCACGGGACTGGGCCTCGTTGACTG
TTATGTTACGGCCGTCCAAATTCTGGCCGTTCATGCCTTCGATTGCGTCC
CTCATCGACTTCTCATCGCGGAAGGTAACGAATCCAAATCCTCTGGATCT
TCCAGTCTCGCGATCGTTAATAATCTTCGATTCAAGGATATCGCCGTAAG
CACTGAAGGCCTCATGGAGAGAGCTGTCAGTGGTGGCCCAGGCCAGGCCG
CCTACGAAGCACCGAAACTCGACATCGGCTGAAGCCATTAGGAGAAAACT
TGAAATGGGGACTAAGAAGGAATTACAAGAAAAATCTAAGAGACAGCACC
GCCCTCGTG
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