CB290383

Overview
NameCB290383
Unique NameCB290383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:6..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  437 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 664
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  437 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 664
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  437 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 664
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  437 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 664
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  437 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 664
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = -3
Query:  437 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 688
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      + A   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = -3
Query:  437 DVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 676
            D   + +V  L+WA T   L +AF+     + +K+I DR +GRSRGFGF+TF   ++M  A++ MN   L+GR + +N A
Sbjct:  214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  437 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 664
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  437 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 664
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CB290383 vs. ExPASy Swiss-Prot
Match: RBY1B_MOUSE (RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus musculus GN=Rbmy1b PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = -3
Query:  434 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 688
            MA  D   + F+GGL   T   +L E F  +G +    ++ DRET +SRGF F+TFR     ++A++ MNG  LDG+ I V +A+
Sbjct:    1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEMNGVILDGKRIKVKQAR 85          
The following BLAST results are available for this feature:
BLAST of CB290383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RBM38_CHICK6.699e-1248.68RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR6.699e-1248.68RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK6.699e-1248.68RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]
RB24B_XENLA6.699e-1248.68RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]
RB24A_XENLA6.699e-1248.68RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
HNRGT_HUMAN6.699e-1242.86RNA-binding motif protein, X-linked-like-2 OS=Homo... [more]
ROC5_NICSY1.143e-1140.0033 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM38_HUMAN1.492e-1147.37RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
RBM38_XENTR1.949e-1147.37RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
RBY1B_MOUSE2.545e-1140.00RNA-binding motif protein, Y chromosome, family 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bb05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bb05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290383 ID=CB290383; Name=CB290383; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTTTTTTTTTTTGAAAAGAACTGTAATTCATTTCCTCTTTTTTTT
CAAACAATTAACCAAACAGGGAGAACGAAACAACACAGGATAACAGGAAC
CGATCAAAACGACACATCATAACCCAAGGAAAATATCAAAACACGGAACG
GTAACATTCAACTCCTAATTTATCCTACAAAACCCTAGTTCCTCCAGCTA
CCGCCATCAAAAGCACCGCTCCTTGAGTATCGGGAACCACCATCACCGCC
ATATCCACCGTCACGGCTGTAACCACCTTCACGGCGGCCACCATATCCAC
CGCCGCCACCTCCGTATCCGCGGCTCCCACCGTATCCACCGCCACCACCA
CTTTCACGGCGTCCACCACCTCCATATCCACCACCGCCACGGCTTCCGTA
ACCGCCACCGCCACCGCCACCGCTTCCACGGGACTGGGCCTCGTTGACTG
TTATGTTACGGCCGTCCAAATTCTGGCCGTTCATGCCTTCGATTGCGTCC
CTCATCGACTTCTCATCGCGGAAGGTAACGAATCCAAATCCTCTGGATCT
TCCAGTCTCGCGATCGTTAATAATCTTCGATTCAAGGATATCGCCGTAAG
CACTGAAGGCCTCATGGAGAGAGCTGTCAGTGGTGGCCCAGGCCAGGCCG
CCTACGAAGCACCGAAACTCGACATCGGCTGAAGCCATTAGGAGAAAACT
TGAAATGGGGACTAAGAAGGAATTACAAGAAAAATCTAAGAGACAGCACC
GCCCTCGTG
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