CB290389

Overview
NameCB290389
Unique NameCB290389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290389_ssr222 microsatellite CB290389_ssr222:222..231. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig130 contig Csv1_Contig130:1..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290389 vs. ExPASy Swiss-Prot
Match: BRSK1_HUMAN (BR serine/threonine-protein kinase 1 OS=Homo sapiens GN=BRSK1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.340e-31
Identity = 71/185 (38.38%), Postives = 112/185 (60.54%), Query Frame = 1
Query:  226 ERHMEEERHVLF-GKYEMGRLLGKGTFAKVYYGKQLMTGESVAIKVINKDQLKKEFMMEQIKREISVMRLVRHPNVVELREVMATKKKIFVAMEYVKGGELF-AKVARGRLREDLARKYFQQLISAVDFCHSRGVSHRXXXXXXXXXXXXXXXXISDFGLSALPEQLRNDGLLHTQCGTPAYVAP 774
            E   E  RH  + G Y + + LGKG    V  G   +TG+ VAIK++N+++L +  +M+ ++REI++++L+ HP+V++L +V   KK +++ +E+V GGELF   V +GRL    ARK+F+Q++SA+DFCHS  + HR                I+DFG+++L      D LL T CG+P Y  P
Sbjct:   35 EEAEERGRHAQYVGPYRLEKTLGKGQTGLVKLGVHCITGQKVAIKIVNREKLSESVLMK-VEREIAILKLIEHPHVLKLHDVYENKKYLYLVLEHVSGGELFDYLVKKGRLTPKEARKFFRQIVSALDFCHSYSICHRDLKPENLLLDEKNNIRIADFGMASLQV---GDSLLETSCGSPHYACP 215          
BLAST of CB290389 vs. ExPASy Swiss-Prot
Match: AMPKA_DICDI (5'-AMP-activated serine/threonine-protein kinase catalytic subunit alpha OS=Dictyostelium discoideum GN=snfA PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.285e-31
Identity = 74/180 (41.11%), Postives = 107/180 (59.44%), Query Frame = 1
Query:  241 EERHVLFGKYEMGRLLGKGTFAKVYYGKQLMTGESVAIKVINKDQLKKEFMMEQIKREISVMRLVRHPNVVELREVMATKKKIFVAMEYVKGGELFAKVAR-GRLREDLARKYFQQLISAVDFCHSRGVSHR-XXXXXXXXXXXXXXXXISDFGLSALPEQLRNDGLLHTQCGTPAYVAP 774
            E+   + G Y + + LG G+F KV   + + TG  VAIK++N+ ++K   M E+I+REI  M+L RHP++++L EV+ T   IF+ MEYV GGELF  + + G+L ED +R+ FQQ+IS VD+CH   V HR                 I+DFGLS     +++   L T CG+P Y AP
Sbjct:   22 EKSSQIIGNYRLDKTLGIGSFGKVKLAEHIRTGVKVAIKILNRTKIKNLKMDEKIRREIQNMKLFRHPHIIKLYEVIETTTDIFMVMEYVTGGELFEYIVKNGKLLEDESRRLFQQMISGVDYCHHHMVVHRDLKPENLLLDPINKCIKIADFGLS---NMMQDGDFLKTSCGSPNYAAP 198          
BLAST of CB290389 vs. ExPASy Swiss-Prot
Match: MARK2_RAT (Serine/threonine-protein kinase MARK2 OS=Rattus norvegicus GN=Mark2 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.091e-31
Identity = 73/193 (37.82%), Postives = 115/193 (59.59%), Query Frame = 1
Query:  211 SNFLRERHM----EEERHVLFGKYEMGRLLGKGTFAKVYYGKQLMTGESVAIKVINKDQLKKEFMMEQIKREISVMRLVRHPNVVELREVMATKKKIFVAMEYVKGGELF-AKVARGRLREDLARKYFQQLISAVDFCHSRGVSHRXXXXXXXXXXXXXXXXISDFGLSALPEQLRNDGLLHTQCGTPAYVAP 774
            SN LR R+     +E+ H+  G Y + + +GKG FAKV   + ++TG+ VA+K+I+K QL     ++++ RE+ +M+++ HPN+V+L EV+ T+K +++ MEY  GGE+F   VA GR++E  AR  F+Q++SAV +CH + + HR                I+DFG S    +      L T CG+P Y AP
Sbjct:   32 SNMLRGRNSATSADEQPHI--GNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSS-SLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS---NEFTFGNKLDTFCGSPPYAAP 218          
BLAST of CB290389 vs. ExPASy Swiss-Prot
Match: MARK2_MOUSE (Serine/threonine-protein kinase MARK2 OS=Mus musculus GN=Mark2 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 5.091e-31
Identity = 73/193 (37.82%), Postives = 115/193 (59.59%), Query Frame = 1
Query:  211 SNFLRERHM----EEERHVLFGKYEMGRLLGKGTFAKVYYGKQLMTGESVAIKVINKDQLKKEFMMEQIKREISVMRLVRHPNVVELREVMATKKKIFVAMEYVKGGELF-AKVARGRLREDLARKYFQQLISAVDFCHSRGVSHRXXXXXXXXXXXXXXXXISDFGLSALPEQLRNDGLLHTQCGTPAYVAP 774
            SN LR R+     +E+ H+  G Y + + +GKG FAKV   + ++TG+ VA+K+I+K QL     ++++ RE+ +M+++ HPN+V+L EV+ T+K +++ MEY  GGE+F   VA GR++E  AR  F+Q++SAV +CH + + HR                I+DFG S    +      L T CG+P Y AP
Sbjct:   32 SNMLRGRNSATSADEQPHI--GNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSS-SLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS---NEFTFGNKLDTFCGSPPYAAP 218          
BLAST of CB290389 vs. ExPASy Swiss-Prot
Match: BRSK1_MOUSE (BR serine/threonine-protein kinase 1 OS=Mus musculus GN=Brsk1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.091e-31
Identity = 68/183 (37.16%), Postives = 111/183 (60.66%), Query Frame = 1
Query:  232 HMEEERHVLF-GKYEMGRLLGKGTFAKVYYGKQLMTGESVAIKVINKDQLKKEFMMEQIKREISVMRLVRHPNVVELREVMATKKKIFVAMEYVKGGELF-AKVARGRLREDLARKYFQQLISAVDFCHSRGVSHRXXXXXXXXXXXXXXXXISDFGLSALPEQLRNDGLLHTQCGTPAYVAP 774
            H    +H  + G Y + + LGKG    V  G   +TG+ VA+K++N+++L +  +M+ ++REI++++L+ HP+V++L +V   KK +++ +E+V GGELF   V +GRL    ARK+F+Q++SA+DFCHS  + HR                I+DFG+++L      D LL T CG+P Y  P
Sbjct:   21 HPHPPQHAQYVGPYRLEKTLGKGQTGLVKLGVHCITGQKVAVKIVNREKLSESVLMK-VEREIAILKLIEHPHVLKLHDVYENKKYLYLVLEHVSGGELFDYLVKKGRLTPKEARKFFRQIVSALDFCHSYSICHRDLKPENLLLDEKNNIRIADFGMASLQV---GDSLLETSCGSPHYACP 199          
BLAST of CB290389 vs. ExPASy Swiss-Prot
Match: MARK2_HUMAN (Serine/threonine-protein kinase MARK2 OS=Homo sapiens GN=MARK2 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 8.683e-31
Identity = 72/193 (37.31%), Postives = 115/193 (59.59%), Query Frame = 1
Query:  211 SNFLRERHM----EEERHVLFGKYEMGRLLGKGTFAKVYYGKQLMTGESVAIKVINKDQLKKEFMMEQIKREISVMRLVRHPNVVELREVMATKKKIFVAMEYVKGGELF-AKVARGRLREDLARKYFQQLISAVDFCHSRGVSHRXXXXXXXXXXXXXXXXISDFGLSALPEQLRNDGLLHTQCGTPAYVAP 774
            SN +R R+     +E+ H+  G Y + + +GKG FAKV   + ++TG+ VA+K+I+K QL     ++++ RE+ +M+++ HPN+V+L EV+ T+K +++ MEY  GGE+F   VA GR++E  AR  F+Q++SAV +CH + + HR                I+DFG S    +      L T CG+P Y AP
Sbjct:   32 SNMIRGRNSATSADEQPHI--GNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSS-SLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS---NEFTFGNKLDTFCGSPPYAAP 218          
BLAST of CB290389 vs. ExPASy Swiss-Prot
Match: BRSK2_HUMAN (BR serine/threonine-protein kinase 2 OS=Homo sapiens GN=BRSK2 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 3.300e-30
Identity = 67/172 (38.95%), Postives = 106/172 (61.63%), Query Frame = 1
Query:  262 GKYEMGRLLGKGTFAKVYYGKQLMTGESVAIKVINKDQLKKEFMMEQIKREISVMRLVRHPNVVELREVMATKKKIFVAMEYVKGGELF-AKVARGRLREDLARKYFQQLISAVDFCHSRGVSHRXXXXXXXXXXXXXXXXISDFGLSALPEQLRNDGLLHTQCGTPAYVAP 774
            G Y + + LGKG    V  G   +T + VAIK++N+++L +  +M+ ++REI++++L+ HP+V++L +V   KK +++ +E+V GGELF   V +GRL    ARK+F+Q+ISA+DFCHS  + HR                I+DFG+++L      D LL T CG+P Y  P
Sbjct:   17 GPYRLEKTLGKGQTGLVKLGVHCVTCQKVAIKIVNREKLSESVLMK-VEREIAILKLIEHPHVLKLHDVYENKKYLYLVLEHVSGGELFDYLVKKGRLTPKEARKFFRQIISALDFCHSHSICHRDLKPENLLLDEKNNIRIADFGMASLQV---GDSLLETSCGSPHYACP 184          
BLAST of CB290389 vs. ExPASy Swiss-Prot
Match: MARK3_RAT (MAP/microtubule affinity-regulating kinase 3 OS=Rattus norvegicus GN=Mark3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.309e-30
Identity = 69/180 (38.33%), Postives = 108/180 (60.00%), Query Frame = 1
Query:  238 EEERHVLFGKYEMGRLLGKGTFAKVYYGKQLMTGESVAIKVINKDQLKKEFMMEQIKREISVMRLVRHPNVVELREVMATKKKIFVAMEYVKGGELF-AKVARGRLREDLARKYFQQLISAVDFCHSRGVSHRXXXXXXXXXXXXXXXXISDFGLSALPEQLRNDGLLHTQCGTPAYVAP 774
            +E+ H+  G Y + + +GKG FAKV   + ++TG  VAIK+I+K QL     ++++ RE+ +M+++ HPN+V+L EV+ T+K +++ MEY  GGE+F   VA GR++E  AR  F+Q++SAV +CH + + HR                I+DFG S    +      L T CG+P Y AP
Sbjct:   48 DEQPHI--GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPT-SLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKITDFGFS---NEFTVGSKLDTFCGSPPYAAP 221          
BLAST of CB290389 vs. ExPASy Swiss-Prot
Match: MARK3_MOUSE (MAP/microtubule affinity-regulating kinase 3 OS=Mus musculus GN=Mark3 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.309e-30
Identity = 69/180 (38.33%), Postives = 108/180 (60.00%), Query Frame = 1
Query:  238 EEERHVLFGKYEMGRLLGKGTFAKVYYGKQLMTGESVAIKVINKDQLKKEFMMEQIKREISVMRLVRHPNVVELREVMATKKKIFVAMEYVKGGELF-AKVARGRLREDLARKYFQQLISAVDFCHSRGVSHRXXXXXXXXXXXXXXXXISDFGLSALPEQLRNDGLLHTQCGTPAYVAP 774
            +E+ H+  G Y + + +GKG FAKV   + ++TG  VAIK+I+K QL     ++++ RE+ +M+++ HPN+V+L EV+ T+K +++ MEY  GGE+F   VA GR++E  AR  F+Q++SAV +CH + + HR                I+DFG S    +      L T CG+P Y AP
Sbjct:   48 DEQPHI--GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPT-SLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS---NEFTVGSKLDTFCGSPPYAAP 221          
BLAST of CB290389 vs. ExPASy Swiss-Prot
Match: MARK1_RAT (Serine/threonine-protein kinase MARK1 OS=Rattus norvegicus GN=Mark1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.309e-30
Identity = 68/180 (37.78%), Postives = 108/180 (60.00%), Query Frame = 1
Query:  238 EEERHVLFGKYEMGRLLGKGTFAKVYYGKQLMTGESVAIKVINKDQLKKEFMMEQIKREISVMRLVRHPNVVELREVMATKKKIFVAMEYVKGGELF-AKVARGRLREDLARKYFQQLISAVDFCHSRGVSHRXXXXXXXXXXXXXXXXISDFGLSALPEQLRNDGLLHTQCGTPAYVAP 774
            +E+ H+  G Y + + +GKG FAKV   + ++TG  VA+K+I+K QL     ++++ RE+ +M+++ HPN+V+L EV+ T+K +++ MEY  GGE+F   VA GR++E  AR  F+Q++SAV +CH + + HR                I+DFG S    +      L T CG+P Y AP
Sbjct:   52 DEQPHI--GNYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPT-SLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKCIVHRDLKAENLLLDADMNIKIADFGFS---NEFTVGNKLDTFCGSPPYAAP 225          
The following BLAST results are available for this feature:
BLAST of CB290389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BRSK1_HUMAN1.340e-3138.38BR serine/threonine-protein kinase 1 OS=Homo sapie... [more]
AMPKA_DICDI2.285e-3141.115'-AMP-activated serine/threonine-protein kinase c... [more]
MARK2_RAT5.091e-3137.82Serine/threonine-protein kinase MARK2 OS=Rattus no... [more]
MARK2_MOUSE5.091e-3137.82Serine/threonine-protein kinase MARK2 OS=Mus muscu... [more]
BRSK1_MOUSE5.091e-3137.16BR serine/threonine-protein kinase 1 OS=Mus muscul... [more]
MARK2_HUMAN8.683e-3137.31Serine/threonine-protein kinase MARK2 OS=Homo sapi... [more]
BRSK2_HUMAN3.300e-3038.95BR serine/threonine-protein kinase 2 OS=Homo sapie... [more]
MARK3_RAT4.309e-3038.33MAP/microtubule affinity-regulating kinase 3 OS=Ra... [more]
MARK3_MOUSE4.309e-3038.33MAP/microtubule affinity-regulating kinase 3 OS=Mu... [more]
MARK1_RAT4.309e-3037.78Serine/threonine-protein kinase MARK1 OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bb08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bb08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290389 ID=CB290389; Name=CB290389; organism=Citrus sinensis; type=EST; length=776bp
CGTAAACACAAACCAGACACAAAACCAAGTGCCCAAAAATCAACACCCCA
TTGAAAAGGAAGAGAAAAGCTTTGATCAAACACCCACTTCATGGAATCAA
TTCAAATCTGCATAACCGCAGTCCTTTCTTGGATCCCCTTATCGCAGTAT
TATTATCATAATTGATAATTCATAGGGATACAATTATAGTCCTGATTCAA
AAGACAAAATTCTAATTTCTTGAGAGAGAGACACATGGAAGAGGAGAGGC
ATGTTCTTTTCGGAAAGTACGAGATGGGGAGGTTATTAGGCAAGGGCACG
TTCGCGAAAGTGTATTACGGGAAGCAGCTGATGACAGGGGAGAGCGTGGC
GATCAAAGTGATCAACAAGGATCAATTGAAGAAGGAATTCATGATGGAGC
AGATCAAGCGAGAAATCTCTGTCATGAGATTAGTCCGCCACCCGAATGTC
GTCGAGTTGAGAGAAGTTATGGCCACCAAGAAGAAGATCTTTGTTGCCAT
GGAGTACGTCAAAGGTGGCGAGCTCTTCGCCAAAGTCGCCAGAGGCAGGC
TAAGGGAGGATCTCGCGAGGAAGTATTTCCAACAACTCATCAGTGCCGTC
GATTTCTGCCACAGCAGGGGAGTCTCTCACCGTGACCTGAAGCCGGAGAA
TCTGTTGTTGGACGAGAATGAGGATCTAAAGATCTCTGACTTTGGCCTCT
CTGCTCTCCCCGAGCAGCTGCGAAACGACGGCCTTCTGCACACCCAGTGT
GGGACTCCTGCTTACGTGGCGCCGGA
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