CB290398

Overview
NameCB290398
Unique NameCB290398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:704..1579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290398 vs. ExPASy Swiss-Prot
Match: THI4_META3 (Putative thiazole biosynthetic enzyme OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0798 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.232e-15
Identity = 45/134 (33.58%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  468 VAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 869
            +  ED+I+K G+V GVV N   ++        +DP  + AK V+ + GHD     T  ++ + +G++  +PG K+L  +  E+ +++ T+E+ PG+ V GM      G  RMG  FG M ISG+  A + L+ L
Sbjct:  132 IVVEDVILKEGKVSGVVINSYAINK---AGLHIDPLTINAKYVIDATGHDASVACTLARKNEDLGLV--IPGEKSLWADEGENGLLKYTKELFPGLFVCGMASNATHGGYRMGAVFGGMYISGKIVADMILEKL 260          
BLAST of CB290398 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.140e-15
Identity = 50/134 (37.31%), Postives = 71/134 (52.99%), Query Frame = -2
Query:  468 VAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 869
            +  EDLI+K  +V GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++  +  E+++ R TREV PG+ V GM         RMG  FG M +SG+K A L L+ L
Sbjct:  131 IVVEDLILKEDKVSGVVIQSYSIEK---AGLHIDPITISAKYVIDSTGHDASVINTLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAELILEKL 259          
BLAST of CB290398 vs. ExPASy Swiss-Prot
Match: THI4_SULIY (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1786 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.063e-14
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = -2
Query:  468 NAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 875
            + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  128 HGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290398 vs. ExPASy Swiss-Prot
Match: THI4_SULIM (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1670 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.063e-14
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = -2
Query:  468 NAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 875
            + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  128 HGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290398 vs. ExPASy Swiss-Prot
Match: THI4_SULIL (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1798 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.063e-14
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = -2
Query:  468 NAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 875
            + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  128 HGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290398 vs. ExPASy Swiss-Prot
Match: THI4_SULIK (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1717 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.063e-14
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = -2
Query:  468 NAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 875
            + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  128 HGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290398 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.063e-14
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = -2
Query:  468 NAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 875
            + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  128 HGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290398 vs. ExPASy Swiss-Prot
Match: THI4_PYRIL (Putative thiazole biosynthetic enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.063e-14
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = -2
Query:  468 VAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 869
            V  +D+I +G   RV G++  W  + M+    S +DP   +AK V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+ V GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  122 VHVDDVIFRGDPPRVVGLLWVWTPIQMSG---SHVDPLYTQAKAVLDATGHDAEVISIAARKVPELGI--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYVAGMAVCTVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CB290398 vs. ExPASy Swiss-Prot
Match: THI4_METAC (Putative thiazole biosynthetic enzyme OS=Methanosarcina acetivorans GN=MA_2851 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = -2
Query:  468 NAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE-EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 875
            N V+ ED++++   RV G+V NW  V+     +  +DP ++  K+V+   GH+     T ++++ +  + E  + G K +     E   V  T+E+ PG+IV GM       APRMGP FG M++SG+KAA LAL  L
Sbjct:  123 NLVSFEDIMIRENDRVTGIVINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHEAVVCNTILRKIPNAKIGELGLLGEKPMWSEVGERLAVNATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLALDRL 257          
BLAST of CB290398 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.368e-14
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = -2
Query:  468 VAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 869
            +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ L
Sbjct:  131 IVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKL 259          
The following BLAST results are available for this feature:
BLAST of CB290398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
THI4_META36.232e-1533.58Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METMP8.140e-1537.31Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULIY1.063e-1434.06Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIM1.063e-1434.06Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIL1.063e-1434.06Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIK1.063e-1434.06Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIA1.063e-1434.06Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_PYRIL1.063e-1435.29Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_METAC1.813e-1435.51Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METM72.368e-1435.07Putative thiazole biosynthetic enzyme OS=Methanoco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290398 ID=CB290398; Name=CB290398; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTGATCTTAATCACATCAGCACTTTCCCATTGGCTGATGC
CTCAAGTTATAAACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGGCAG
TCTTACACATAACACAGATAACAAGGACTAGATACGCAACTGCAAATTCA
CCTCCGAAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAA
TTAAAGGTTCCATGATGGACCGGAAACAAACACTTTATTCACAAAACCTC
ACAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAAT
ACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTG
ATGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAG
CTGCAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCGTCT
AATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTG
CCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCACCAT
CAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCC
CTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTT
CATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTC
CAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTC
GCTTCCATTACATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGA
CACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGCCCTTGACTA
TCAAGTCCTCGGCTGCCACTGCATTA
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