CB290400

Overview
NameCB290400
Unique NameCB290400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH21_ARATH (Probable S-acyltransferase At5g05070 OS=Arabidopsis thaliana GN=At5g05070 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.224e-13
Identity = 45/150 (30.00%), Postives = 64/150 (42.67%), Query Frame = -1
Query:  300 DLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAW---WKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVR----RRRIPYLRGIPERV 728
            D++  G +I+   C  C + +PPRA HC  C+ CV +FDHHC W+G C+   N+  F  +I   T LC++  V     L       W     D+                            TNQTTYE  R    ++  PY RG+ + V
Sbjct:  160 DVFVNGYTIKVKFCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIARRNYPFFICFISSSTLLCIYVFVFSWINLIRQPGKLWRTMSDDIVSVILIVYTFVAVWFVGGLTIFHFYLMSTNQTTYENFRYRYDKKENPYKRGLLKNV 309          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH12_MOUSE (Probable palmitoyltransferase ZDHHC12 OS=Mus musculus GN=Zdhhc12 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.225e-12
Identity = 47/148 (31.76%), Postives = 59/148 (39.86%), Query Frame = -1
Query:  252 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAWW--KDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKLCC 689
            C +C V QP RA+HC DC RCV ++DHHC W+  CVG  NH  F  Y+  +  + LW   L  + L+       W                                  N TT+E +   RI YLR       PF  G  RNL    C
Sbjct:   99 CRHCLVLQPLRARHCRDCRRCVRRYDHHCPWMENCVGERNHPLFVAYLALQLVVLLWGLCLAWSGLQFFQPWGLWLRSTGLLFTTFLLLSFFALVVALLLASHLYLVARNTTTWEFISSHRIAYLR--QRTSNPFDRGPTRNLAHFFC 244          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDHC4_RAT (Probable palmitoyltransferase ZDHHC4 OS=Rattus norvegicus GN=Zdhhc4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = -1
Query:  471 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALA 689
            CS C++ +P R+KHC  CDRCV +FDHHCVW+  C+G  N   F  Y+   TA      +L  A+L   +A++
Sbjct:  151 CSTCDLRKPARSKHCRVCDRCVHRFDHHCVWVNNCIGAWNTGYFLIYLLTLTASAATIAILSAAFLLRLVAVS 223          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: PFA3_GIBZE (Palmitoyltransferase PFA3 OS=Gibberella zeae GN=PFA3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = -1
Query:  516 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWT 689
            C  C   +P RA HC  C RCVL+ DHHC WL TC+GL NH  F  ++   +  C W+
Sbjct:  112 CKKCQARKPDRAHHCSTCRRCVLKMDHHCPWLATCIGLRNHKAFLLFLIYTSLFCFWS 169          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH23_ARATH (Probable S-acyltransferase At5g41060 OS=Arabidopsis thaliana GN=At5g41060 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.565e-12
Identity = 31/97 (31.96%), Postives = 50/97 (51.55%), Query Frame = -1
Query:  489 GRSFSGSNATSWTKLVLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLK 779
            G + SG++ T     V ++   G   +   C  C + +PPR  HC  C+ CV +FDHHC W+G C+   N+  F+ ++   T LC++       Y+K
Sbjct:  119 GNTGSGTSQTPRLPRVKEVEVNGKVFKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIAQRNYRFFFMFVFSTTLLCVYVFAFCCVYIK 215          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDHC9_ARATH (Probable S-acyltransferase At3g26935 OS=Arabidopsis thaliana GN=At3g26935 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 30/99 (30.30%), Postives = 53/99 (53.54%), Query Frame = -1
Query:  489 GRSFSGSNATSWTKL--VLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLK 779
            G   +G+  T   +L  + ++   G + +   C  C + +PPR  HC  C+ CV +FDHHC W+G C+G+ N+  F+ ++   T LC++       Y++
Sbjct:  119 GNMDAGAGQTPQLRLPRIKEVQLNGITFKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGMRNYRFFFMFVFSTTLLCIYVFAFCWVYIR 217          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH12_ARATH (Probable S-acyltransferase At3g56920 OS=Arabidopsis thaliana GN=At3g56920 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 46/150 (30.67%), Postives = 69/150 (46.00%), Query Frame = -1
Query:  306 DLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVL-YVAYLKAN----IALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVR----RRRIPYLRGIPE 728
            D+   G +++   C  C + +PPRA HC  C+ CV +FDHHC W+G C+ L N+  F  ++   T LC++  V  +V+ LK +    + LA   D+                            TNQTT E  R    ++  PY +GI E
Sbjct:  131 DVMVNGFTVKVKFCDTCQLYRPPRAFHCSICNNCVQRFDHHCPWVGQCIALRNYPFFVCFLSCSTLLCIYVFVFSWVSMLKVHGEFYVVLA--DDLILGVLGLYCFVSVWFVGGLTVFHFYLICTNQTTCENFRYHYDKKENPYRKGILE 278          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH22_ARATH (S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.037e-11
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = -1
Query:  498 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVA 689
            C+ C + +P RAKHC  CDRCV QFDHHC W+  CVG  N   F+ ++  E    L TG + +A
Sbjct:  373 CATCKIIRPLRAKHCSTCDRCVEQFDHHCPWVSNCVGKKNKWEFFLFLLLEVLAMLITGGVTLA 436          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDHC5_PONAB (Probable palmitoyltransferase ZDHHC5 OS=Pongo abelii GN=ZDHHC5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = -1
Query:  495 GTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWT---GVLYVAY 713
            G  +R   C+ C   +PPR  HC  CD CV +FDHHC W+  C+G  N+  F+ ++   TA  +     G+LYV Y
Sbjct:   98 GIQVRMKWCATCRFYRPPRCSHCSVCDNCVEEFDHHCPWVNNCIGRRNYRYFFLFLLSLTAHIMGVFGFGLLYVLY 173          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDHC5_PANTR (Probable palmitoyltransferase ZDHHC5 OS=Pan troglodytes GN=ZDHHC5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = -1
Query:  495 GTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWT---GVLYVAY 713
            G  +R   C+ C   +PPR  HC  CD CV +FDHHC W+  C+G  N+  F+ ++   TA  +     G+LYV Y
Sbjct:   98 GIQVRMKWCATCRFYRPPRCSHCSVCDNCVEEFDHHCPWVNNCIGRRNYRYFFLFLLSLTAHIMGVFGFGLLYVLY 173          
The following BLAST results are available for this feature:
BLAST of CB290400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ZDH21_ARATH3.224e-1330.00Probable S-acyltransferase At5g05070 OS=Arabidopsi... [more]
ZDH12_MOUSE1.225e-1231.76Probable palmitoyltransferase ZDHHC12 OS=Mus muscu... [more]
ZDHC4_RAT1.600e-1242.47Probable palmitoyltransferase ZDHHC4 OS=Rattus nor... [more]
PFA3_GIBZE1.600e-1246.55Palmitoyltransferase PFA3 OS=Gibberella zeae GN=PF... [more]
ZDH23_ARATH3.565e-1231.96Probable S-acyltransferase At5g41060 OS=Arabidopsi... [more]
ZDHC9_ARATH4.656e-1230.30Probable S-acyltransferase At3g26935 OS=Arabidopsi... [more]
ZDH12_ARATH4.656e-1230.67Probable S-acyltransferase At3g56920 OS=Arabidopsi... [more]
ZDH22_ARATH1.037e-1146.88S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=... [more]
ZDHC5_PONAB1.355e-1139.47Probable palmitoyltransferase ZDHHC5 OS=Pongo abel... [more]
ZDHC5_PANTR1.355e-1139.47Probable palmitoyltransferase ZDHHC5 OS=Pan troglo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290400 ID=CB290400; Name=CB290400; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTCACAGAACCTTTTGTGTTGCCATAACTTTTAACAAGA
CCAAATGAATGTACAACCATGGGTTTCAACATAACTCACTGTAAAATTTA
GGGGAAAGCACTAAAGTCAATGATACAATGCTCCCTGATGTCAACAGCAG
CAACGACAGGTTAAAAAATCTAAGCATGTGTAAGGTCTAGACTTTTCTTC
AATTTCCTGTGCAGTGGGCAACCTTTCCAAATTGTATACGCTAGCTTTAA
CACAACATAATTTGTAAAGGTTTCTGCAAACTCCATCACTAAAGGGATAC
ACTCGTTCAGGAATCCCCCTCAAATACGGGATGCGTCTACGTCTTACGAG
CTCATAGGTAGTCTGATTTGTCAGGATAAGATAACTATGAAAAAGGAGGA
GGAGGAGCAAAAATATCAAGAAAATTGCCAAAATAATCAGTAGCACAATC
ATGATTACATCCTTCCACCAAGCCAGTGCTATATTAGCCTTCAAGTATGC
AACATACAAGACGCCAGTCCAAAGGCATAGTGCTGTTTCTTCACAAATGT
ACCACCAAAATCGACAATGATTACCCAGGCCAACACATGTTCCCAGCCAA
ACACAATGATGATCAAACTGAAGAACACATCTGTCACAATCATGGCAATG
CTTTGCCCGTGGAGGCTGTTCGACATTACAGTACGAGCAAGTTAAACTTC
TAATGGATGTTCCAGGAGGATACAGGTCCAGGACTAGCTTTGTCCAAGAT
GTTGCATTACTTCCTGAAAAACTTCTTCCTGGCCGACTTCCCTCCATGGT
AATGACCATGTTTCCATTTTTGCTTGAACCCGGCTGTTTTGAGGT
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