CB290400

Overview
NameCB290400
Unique NameCB290400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDHC6_DICDI (Putative ZDHHC-type palmitoyltransferase 6 OS=Dictyostelium discoideum GN=DDB_G0275149 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = -1
Query:  543 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYIC 689
            CS C + +P RAKHC  C RCV +FDHHC W+  CVG+ N+  F   +C
Sbjct:  397 CSTCLINKPIRAKHCRTCKRCVARFDHHCAWINNCVGVNNNLLFIILLC 445          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDHC4_MOUSE (Probable palmitoyltransferase ZDHHC4 OS=Mus musculus GN=Zdhhc4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = -1
Query:  492 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYL 689
            C  C++ +P R+KHC  CDRCV +FDHHCVW+  C+G  N   F  Y+   TA       +  A+L
Sbjct:  151 CPTCDLRKPARSKHCRLCDRCVHRFDHHCVWVNNCIGAWNTRYFLIYLLTLTASAATIATVTAAFL 216          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH13_HUMAN (Probable palmitoyltransferase ZDHHC13 OS=Homo sapiens GN=ZDHHC13 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 26/77 (33.77%), Postives = 45/77 (58.44%), Query Frame = -1
Query:  459 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAWWKD 689
            C+ C + +P R+ HCH C+ CV ++D HC+W G C+G GNH  + +++   + +C W       YL ++ A  + +D
Sbjct:  428 CTSCLIRKPLRSLHCHVCNCCVARYDQHCLWTGRCIGFGNHHYYIFFLFFLSMVCGWIIYGSFIYLSSHCATTFKED 504          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: SWF1_NEUCR (Palmitoyltransferase SWF1 OS=Neurospora crassa GN=swf-1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = -1
Query:  465 LYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANI--------ALAWW 725
            L+ PGTS     C  C++ +P R+KHC  C +CV + DHHC+++  CVG  N   F   +     L L+ GVL +  ++A I         + WW
Sbjct:  151 LFHPGTS-----CETCHLLKPARSKHCSICKKCVGRMDHHCIFINNCVGANNQRWFILLLLSTAILTLYGGVLGLVIIRAKIQARFPYWTLMPWW 240          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: PFA4_USTMA (Palmitoyltransferase PFA4 OS=Ustilago maydis GN=PFA4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = -1
Query:  519 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLW 689
            C  C+  +PPR+ HC  C RCVL+ DHHC WL  CVG  NH  F  ++      CL+
Sbjct:  183 CKTCSAFKPPRSHHCKTCQRCVLRMDHHCPWLANCVGHFNHAHFIRFLFYVDVTCLY 239          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ERFB_SCHPO (Palmitoyltransferase erf2 OS=Schizosaccharomyces pombe GN=erf2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = -1
Query:  546 IRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYI 704
            + ++ C  C++ +PPRA HCH CD CV   DHHC+WL TC+G  N+  ++ ++
Sbjct:  179 VNTVYCHTCHLYRPPRASHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFL 231          
The following BLAST results are available for this feature:
BLAST of CB290400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ZDHC6_DICDI6.723e-1151.02Putative ZDHHC-type palmitoyltransferase 6 OS=Dict... [more]
ZDHC4_MOUSE8.781e-1142.42Probable palmitoyltransferase ZDHHC4 OS=Mus muscul... [more]
ZDH13_HUMAN8.781e-1133.77Probable palmitoyltransferase ZDHHC13 OS=Homo sapi... [more]
SWF1_NEUCR8.781e-1134.74Palmitoyltransferase SWF1 OS=Neurospora crassa GN=... [more]
PFA4_USTMA8.781e-1145.61Palmitoyltransferase PFA4 OS=Ustilago maydis GN=PF... [more]
ERFB_SCHPO8.781e-1143.40Palmitoyltransferase erf2 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290400 ID=CB290400; Name=CB290400; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTCACAGAACCTTTTGTGTTGCCATAACTTTTAACAAGA
CCAAATGAATGTACAACCATGGGTTTCAACATAACTCACTGTAAAATTTA
GGGGAAAGCACTAAAGTCAATGATACAATGCTCCCTGATGTCAACAGCAG
CAACGACAGGTTAAAAAATCTAAGCATGTGTAAGGTCTAGACTTTTCTTC
AATTTCCTGTGCAGTGGGCAACCTTTCCAAATTGTATACGCTAGCTTTAA
CACAACATAATTTGTAAAGGTTTCTGCAAACTCCATCACTAAAGGGATAC
ACTCGTTCAGGAATCCCCCTCAAATACGGGATGCGTCTACGTCTTACGAG
CTCATAGGTAGTCTGATTTGTCAGGATAAGATAACTATGAAAAAGGAGGA
GGAGGAGCAAAAATATCAAGAAAATTGCCAAAATAATCAGTAGCACAATC
ATGATTACATCCTTCCACCAAGCCAGTGCTATATTAGCCTTCAAGTATGC
AACATACAAGACGCCAGTCCAAAGGCATAGTGCTGTTTCTTCACAAATGT
ACCACCAAAATCGACAATGATTACCCAGGCCAACACATGTTCCCAGCCAA
ACACAATGATGATCAAACTGAAGAACACATCTGTCACAATCATGGCAATG
CTTTGCCCGTGGAGGCTGTTCGACATTACAGTACGAGCAAGTTAAACTTC
TAATGGATGTTCCAGGAGGATACAGGTCCAGGACTAGCTTTGTCCAAGAT
GTTGCATTACTTCCTGAAAAACTTCTTCCTGGCCGACTTCCCTCCATGGT
AATGACCATGTTTCCATTTTTGCTTGAACCCGGCTGTTTTGAGGT
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