CB290403

Overview
NameCB290403
Unique NameCB290403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:829..1736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: PAT_ECOBW (Putrescine aminotransferase OS=Escherichia coli (strain K12 / BW2952) GN=patA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 77/249 (30.92%), Postives = 125/249 (50.20%), Query Frame = -3 
Query:  142 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 873
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458
[Close]
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: PAT_ECO8A (Putrescine aminotransferase OS=Escherichia coli O8 (strain IAI1) GN=patA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 77/249 (30.92%), Postives = 125/249 (50.20%), Query Frame = -3 
Query:  142 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 873
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAAHKALAAMRVSVEE 458
[Close]
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: PAT_ECO81 (Putrescine aminotransferase OS=Escherichia coli O81 (strain ED1a) GN=patA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 77/249 (30.92%), Postives = 125/249 (50.20%), Query Frame = -3 
Query:  142 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 873
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458
[Close]
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: PAT_ECO7I (Putrescine aminotransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 77/249 (30.92%), Postives = 125/249 (50.20%), Query Frame = -3 
Query:  142 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 873
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLTCAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458
[Close]
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: PAT_ECO5E (Putrescine aminotransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=patA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 77/249 (30.92%), Postives = 125/249 (50.20%), Query Frame = -3 
Query:  142 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 873
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458
[Close]
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: PAT_ECO57 (Putrescine aminotransferase OS=Escherichia coli O157:H7 GN=patA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 77/249 (30.92%), Postives = 125/249 (50.20%), Query Frame = -3 
Query:  142 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 873
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458
[Close]
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: PAT_ECO55 (Putrescine aminotransferase OS=Escherichia coli (strain 55989 / EAEC) GN=patA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 77/249 (30.92%), Postives = 125/249 (50.20%), Query Frame = -3 
Query:  142 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 873
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458
[Close]
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: PAT_ECO45 (Putrescine aminotransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 77/249 (30.92%), Postives = 125/249 (50.20%), Query Frame = -3 
Query:  142 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 873
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458
[Close]
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: PAT_ECO27 (Putrescine aminotransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=patA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 77/249 (30.92%), Postives = 125/249 (50.20%), Query Frame = -3 
Query:  142 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 873
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458
[Close]
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: PAT_ECO24 (Putrescine aminotransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=patA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 77/249 (30.92%), Postives = 125/249 (50.20%), Query Frame = -3 
Query:  142 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPAEVDELISKYGKALKATEERVKE 873
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+           IG  F ++  +  +LV  + +N   I + PP  ++  + + +I    KAL A    V+E
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-----------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEE 458
The following BLAST results are available for this feature:
BLAST of CB290403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
PAT_ECOBW1.796e-2830.92Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECO8A1.796e-2830.92Putrescine aminotransferase OS=Escherichia coli O8... [more]
PAT_ECO811.796e-2830.92Putrescine aminotransferase OS=Escherichia coli O8... [more]
PAT_ECO7I1.796e-2830.92Putrescine aminotransferase OS=Escherichia coli O7... [more]
PAT_ECO5E1.796e-2830.92Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO571.796e-2830.92Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO551.796e-2830.92Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECO451.796e-2830.92Putrescine aminotransferase OS=Escherichia coli O4... [more]
PAT_ECO271.796e-2830.92Putrescine aminotransferase OS=Escherichia coli O1... [more]
PAT_ECO241.796e-2830.92Putrescine aminotransferase OS=Escherichia coli O1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290403 ID=CB290403; Name=CB290403; organism=Citrus sinensis; type=EST; length=908bp
TTTTTTTTTTAGGCAATGCTTTATTGAAGCATCGGAAATTTCAAACGTCA
CAGAAGAGGAAAAAAATATTTGCTTTACATACAAGTCTTACAGTTTTTTT
TCATCAATATCAGCCATTACAATTTACTGCTGGGACTTGAGTTCCTTCAC
CCTCTCCTCGGTCGCCTTCAGTGCCTTCCCATATTTGCTTATTAACTCAT
CAACCTCTGCAGGGGACATTATAAATGGAGGAGACATCATAATGTTGTCA
CCTGAAACACGTACTAACATTCCGTGCTTTTCGCACTGTGCTCCAAAATA
TGCACCTATCCCCCATTCAGGAGGGAACGGTTCATTTGGAGACTTGTTGT
CTGCAAACTCTGTACCAAGAATCAAACCAGTGCCCCGAATCTCTCCAATG
ATGGGACTATCAGAAAAGGCTTTTACACCATCTTGAAACTTTGGCGCTAT
CTTATTTACTTGCTCAACAATATTTCTTTCCTTGTAAATCTTAAGCGCTT
CGATGGCAACGGCACAGGAAACAGGATGCCCAGAATAAGTAAATCCATGA
GAGAAAGAACCAAGTGTGTTGCTTTGAGAGTGAATGACTTCTGAAACTTC
GGGACTCACAAGAATAGCTCCAATGGGCATATATGCTGAAGAAAGGGCCT
TTGCGAAGGACACAAGATCTGGTTTAATGCTGTATTTGTCACAACCAAAC
ATTGTGCCAAGTCTTCCAAATGCACAAATTACCTCATCTGCTATAAAAAG
GATGTCATATTTTTTTACAACAGCTTGAACCTTCTCAAAATAAGTCGCAG
GAGGAGGTATCACGCCTCCTGCCCCCATGACAGGCTCAGCAATAAATGCA
GCAATCGTCTCTGGTCCCTCTTTGAGAATGAGATCCTCTAAATTTTTGGC
TAATCTGG
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