CB290403

Overview
NameCB290403
Unique NameCB290403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:829..1736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: GSA_METS3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=hemL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 48/134 (35.82%), Postives = 67/134 (50.00%), Query Frame = -3
Query:  490 LEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK 891
            L DLI K+G + IA  I E VMG  G I P   + E V+ + ++ +IL I DEVI  F RL      + Y + PDL +  K +    +P+GA     E+ E+I       G      T+SG+P+S    I  LK
Sbjct:  181 LSDLIQKDG-DNIACLIMEVVMGNIGCIEPKKGFLEFVRKITEENNILLIFDEVITGF-RLARGGAQEYYGVTPDLTTMGKIVGGG-LPMGAFAGKKEIMELIAPN----GPVYQAGTFSGNPISVQAGISTLK 307          
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: GSA_CLOBA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=hemL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 50/162 (30.86%), Postives = 79/162 (48.77%), Query Frame = -3
Query:  409 LEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL-KIYKERNIVEQVNKIAPKFQDGVKAFSD 891
            +++L  K G E IAA I EPV G  GVI     + ++++ +  +Y  L I DEV+  F R+        + IKPDL+++AK +    +P GA     E+ E +    +  G      T SG+P+  A  +  L K+       + V K+  K QDG+   S+
Sbjct:  186 IKELFKKYGNE-IAAVIIEPVAGNMGVIKANEDFIKELRDLCDEYGALLIFDEVMTGF-RVAFKGAQTLFDIKPDLITYAKIMGGG-LPCGAYAGKKEIMEKL----SPCGGVYQAGTMSGNPIVMAAGLATLTKLKNNTEFYDNVEKMGKKLQDGLIKISE 340          
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: GSA_CHLP8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chlorobaculum parvum (strain NCIB 8327) GN=hemL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 47/153 (30.72%), Postives = 72/153 (47.06%), Query Frame = -3
Query:  421 ILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK 879
            I+ E    +AA I EPV G  GVIP    +   ++ +     I+ I DEV+C F R+      + Y + PDL +  K +    +P+GA     ++ E I      LGS     T SG+P++    +E LKI  E N   ++ + A   + G K
Sbjct:  194 IVNENKGQVAAIIIEPVAGNTGVIPAKKEFLVALRELCDAEGIVLIFDEVMCGF-RVALGGAQELYGVTPDLTTMGKIIGGG-LPVGAFGGKRKIMENI----APLGSVYQAGTLSGNPLALTAGLETLKILMEENPYPELERKAAFLEAGFK 340          
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: GSA_ANADF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=hemL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 49/173 (28.32%), Postives = 88/173 (50.87%), Query Frame = -3
Query:  349 TIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK---AFSDSPIIGEIRGTGLILGTEFAD 858
            +IA  I EPV+G  GV+ P   Y + + A+ +K+  LFI DEV+  F R+ +   C  + ++PDLV+F K +    +P+GA     +V + +       G      T SG+P++ A     L++       E++ +++ K  DG++   A +  P+  ++   G +L   FA+
Sbjct:  199 SIACVIIEPVVGNMGVLVPKDGYLQGLLALCRKHGALFIVDEVMTGF-RVSSGGACGLFGVRPDLVTFGKVIGGG-LPVGAFGGRADVMDRV----APAGPIYQAGTLSGNPMAMAAGHATLRLMTGA-AYEKLERLSAKLADGLRERAAAAKVPV--QVNRVGSMLTVFFAE 362          
BLAST of CB290403 vs. ExPASy Swiss-Prot
Match: GSA1_STAS1 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 44/146 (30.14%), Postives = 72/146 (49.32%), Query Frame = -3
Query:  424 ETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 861
            + IAA + EP++G  G++ P   + E+V  +      L I DEVI AF R       D Y + PDL +F K +    +PIG      E+ E    Q   LG      T +G+P+S    I  L++ ++  + EQ++ +  + +DG+
Sbjct:  199 DEIAAVLVEPIVGNFGMVEPKQGFLEQVNEITHNNGSLVIYDEVITAF-RFHYGGAQDLYKVYPDLTAFGKIIGGG-LPIGGYGGKQEIME----QVAPLGPAYQAGTMAGNPLSMKGGIALLEVLEQDGVYEQLDALGKRLEDGL 338          
The following BLAST results are available for this feature:
BLAST of CB290403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
GSA_METS39.898e-1135.82Glutamate-1-semialdehyde 2,1-aminomutase OS=Methan... [more]
GSA_CLOBA9.898e-1130.86Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostr... [more]
GSA_CHLP89.898e-1130.72Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA_ANADF9.898e-1128.32Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaero... [more]
GSA1_STAS19.898e-1130.14Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290403 ID=CB290403; Name=CB290403; organism=Citrus sinensis; type=EST; length=908bp
TTTTTTTTTTAGGCAATGCTTTATTGAAGCATCGGAAATTTCAAACGTCA
CAGAAGAGGAAAAAAATATTTGCTTTACATACAAGTCTTACAGTTTTTTT
TCATCAATATCAGCCATTACAATTTACTGCTGGGACTTGAGTTCCTTCAC
CCTCTCCTCGGTCGCCTTCAGTGCCTTCCCATATTTGCTTATTAACTCAT
CAACCTCTGCAGGGGACATTATAAATGGAGGAGACATCATAATGTTGTCA
CCTGAAACACGTACTAACATTCCGTGCTTTTCGCACTGTGCTCCAAAATA
TGCACCTATCCCCCATTCAGGAGGGAACGGTTCATTTGGAGACTTGTTGT
CTGCAAACTCTGTACCAAGAATCAAACCAGTGCCCCGAATCTCTCCAATG
ATGGGACTATCAGAAAAGGCTTTTACACCATCTTGAAACTTTGGCGCTAT
CTTATTTACTTGCTCAACAATATTTCTTTCCTTGTAAATCTTAAGCGCTT
CGATGGCAACGGCACAGGAAACAGGATGCCCAGAATAAGTAAATCCATGA
GAGAAAGAACCAAGTGTGTTGCTTTGAGAGTGAATGACTTCTGAAACTTC
GGGACTCACAAGAATAGCTCCAATGGGCATATATGCTGAAGAAAGGGCCT
TTGCGAAGGACACAAGATCTGGTTTAATGCTGTATTTGTCACAACCAAAC
ATTGTGCCAAGTCTTCCAAATGCACAAATTACCTCATCTGCTATAAAAAG
GATGTCATATTTTTTTACAACAGCTTGAACCTTCTCAAAATAAGTCGCAG
GAGGAGGTATCACGCCTCCTGCCCCCATGACAGGCTCAGCAATAAATGCA
GCAATCGTCTCTGGTCCCTCTTTGAGAATGAGATCCTCTAAATTTTTGGC
TAATCTGG
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