CB290404

Overview
NameCB290404
Unique NameCB290404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:21..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: BIOA_CORGL (Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Corynebacterium glutamicum GN=bioA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 37/130 (28.46%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  300 VIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL 689
            ++ K++G ++   +G   +D++S  W    G   PRL AAA  Q++T+  +  F   T +P++ L  +LL + T +    VF+++SGS + +  +K+    +   G P + K +  +  YHG T  A S+
Sbjct:   27 LVTKTDGVFLTLEDGSTVIDAMSSWWSAIHGHGHPRLKAAAQKQIDTMS-HVMFGGLTHEPAIKLTHKLLNL-TGNSFDHVFYSDSGSVSVEVAIKMALQASKGQGHPERTKLLTWRSGYHGDTFTAMSV 154          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_LISMF (Acetylornithine aminotransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=argD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 45/142 (31.69%), Postives = 64/142 (45.07%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 719
            P+ +    G+ V D NGK YLD  SG+    LG     +  A   QL  +      W+ +      L   + E+    K   VFF NSG+EAN+  +KL   Y        K+K I  +KS+HG T  + S +    +HQ F
Sbjct:   12 PIDLVNGTGTVVTDKNGKTYLDFTSGIAVCNLGHCPANVAEAVQQQLTNI------WHTSNLYECALQDSVAELIADGKDRLVFFCNSGTEANEAALKLARKYT------GKEKIITFEKSFHGRTFGSMSATAQAKIHQGF 141          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_ALNGL (Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 45/153 (29.41%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK----KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFV 740
            P+V+ + +G  +YD  G++YLD  +G+    LG ++   + A T Q  TL    + +   + P ++LAK L+    +S   +VFF+NSG+EAN+  +K    +     RP++K    +F++   S+HG T+ + +L+        F+   P V
Sbjct:   68 PVVLSRGKGCKLYDPEGREYLDLSAGIAVNVLGHADSDWLRAVTEQAATLTHVSNVF--YSIPQVELAKRLV---ASSFADRVFFSNSGTEANEAAIKFARKFQR-FTRPDEKQPATEFVSFSNSFHGRTMGSLALTSKENYRSPFEPVMPGV 214          
The following BLAST results are available for this feature:
BLAST of CB290404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
BIOA_CORGL7.749e-1128.46Adenosylmethionine-8-amino-7-oxononanoate aminotra... [more]
ARGD_LISMF7.749e-1131.69Acetylornithine aminotransferase OS=Listeria monoc... [more]
ARGD_ALNGL7.749e-1129.41Acetylornithine aminotransferase, mitochondrial OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290404 ID=CB290404; Name=CB290404; organism=Citrus sinensis; type=EST; length=783bp
GAACAGCTAAAACCGGGGAAAAAAAAAAAACACTCCGCCTTTGTTGCATG
TTAAGAGCAAAAATGGTGACCAGCAAGCTCCTTCAATCATCCCTCAAATC
CCAGATTGGTTCATTTACAAAGCATTTTTCTGCTTCCAAAAGTTTGTCGG
AGAACTTGTATCAAATCCCTTTGCTTGCCAGGTTCTATGGTACAGATGCG
TCTTTGCAAAAGGAAGATTCAACCACTAATGGGTTTAAGGGGCATGATAT
GCTGGCACCTTTCACAGCTGGGTGGCAGAGTACTGATGTGCATCCACTGG
TTATAGAAAAGTCTGAGGGTAGTTATGTTTACGACATCAATGGGAAGAAG
TATCTTGATTCTCTTTCTGGCCTATGGTGCACAGCCCTAGGGGGGAGTGA
ACCTCGCCTTGTGGCTGCTGCTACTGCACAATTGAATACCCTGCCATTTT
ACCACTCCTTCTGGAATCGTACCACAAAACCTTCTCTGGATCTTGCAAAG
GAGCTTTTAGAAATGTTTACCGCAAGTAAAATGGCCAAGGTTTTCTTTAC
TAATAGTGGATCAGAAGCCAATGACACTCAGGTCAAGCTGGTTTGGTATT
ACAATAATGCTCTTGGAAGACCAAACAAGAAGAAATTTATTGCACGACAA
AAATCGTACCATGGTTCAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCC
AGCTTTGCACCAAAAATTTGATCTGCCGGCTCCCTTTGTATTGCACACTG
ACTGCCCTCATTATTGGCGCTACGCTCATCCAG
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