CB290404

Overview
NameCB290404
Unique NameCB290404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:21..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_MYCBO (Acetylornithine aminotransferase OS=Mycobacterium bovis GN=argD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.690e-16
Identity = 47/142 (33.10%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 719
            P+ +   +G+ V D++G+ Y+D L G+    LG   P ++ A T Q++TL    + +   T+P + LA+EL+ +  A +  +VFF NSG+EAN+   KL    +   GR    K +A   ++HG T+ + +L+G PA    F
Sbjct:   27 PIALASGDGAVVTDVDGRTYIDLLGGIAVNVLGHRHPAVIEAVTRQMSTLGHTSNLY--ATEPGIALAEELVALLGADQRTRVFFCNSGAEANEAAFKL----SRLTGR---TKLVAAHDAFHGRTMGSLALTGQPAKQTPF 159          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_CITK8 (Succinylornithine transaminase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=astC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 53/151 (35.10%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASK--FWHTGNGYTNEPVLRLAKMLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRFGTHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_YERPE (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Yersinia pestis GN=argD PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.126e-16
Identity = 54/146 (36.99%), Postives = 77/146 (52.74%), Query Frame = 3
Query:  309 KSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            K +GS V+D  G +Y+D   G+  TALG   P LV+A   Q  TL  +H+    T +P+L LA++L+    A+   +VFF NSG+EAN+   KL  +Y      P K K IA   ++HG TL   S+ G P     F      ++H
Sbjct:   29 KGKGSRVWDQQGTEYIDFAGGIAVTALGHCHPALVSALHQQGETL--WHTSNVFTNEPALRLAQKLI---AATFADRVFFANSGAEANEAAFKLARHYAIERHSPYKTKIIAFHNAFHGRTLFTVSVGGQPKYSDGFGPKPADIIH 169          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_SHISS (Succinylornithine transaminase OS=Shigella sonnei (strain Ss046) GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ESCF3 (Succinylornithine transaminase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOUT (Succinylornithine transaminase OS=Escherichia coli (strain UTI89 / UPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOLU (Succinylornithine transaminase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOL6 (Succinylornithine transaminase OS=Escherichia coli O6 GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOL5 (Succinylornithine transaminase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOK1 (Succinylornithine transaminase OS=Escherichia coli O1:K1 / APEC GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
The following BLAST results are available for this feature:
BLAST of CB290404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ARGD_MYCBO4.690e-1633.10Acetylornithine aminotransferase OS=Mycobacterium ... [more]
ASTC_CITK86.126e-1635.10Succinylornithine transaminase OS=Citrobacter kose... [more]
ARGD_YERPE6.126e-1636.99Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ASTC_SHISS8.000e-1634.44Succinylornithine transaminase OS=Shigella sonnei ... [more]
ASTC_ESCF38.000e-1634.44Succinylornithine transaminase OS=Escherichia ferg... [more]
ASTC_ECOUT8.000e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOLU8.000e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOL68.000e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOL58.000e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOK18.000e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290404 ID=CB290404; Name=CB290404; organism=Citrus sinensis; type=EST; length=783bp
GAACAGCTAAAACCGGGGAAAAAAAAAAAACACTCCGCCTTTGTTGCATG
TTAAGAGCAAAAATGGTGACCAGCAAGCTCCTTCAATCATCCCTCAAATC
CCAGATTGGTTCATTTACAAAGCATTTTTCTGCTTCCAAAAGTTTGTCGG
AGAACTTGTATCAAATCCCTTTGCTTGCCAGGTTCTATGGTACAGATGCG
TCTTTGCAAAAGGAAGATTCAACCACTAATGGGTTTAAGGGGCATGATAT
GCTGGCACCTTTCACAGCTGGGTGGCAGAGTACTGATGTGCATCCACTGG
TTATAGAAAAGTCTGAGGGTAGTTATGTTTACGACATCAATGGGAAGAAG
TATCTTGATTCTCTTTCTGGCCTATGGTGCACAGCCCTAGGGGGGAGTGA
ACCTCGCCTTGTGGCTGCTGCTACTGCACAATTGAATACCCTGCCATTTT
ACCACTCCTTCTGGAATCGTACCACAAAACCTTCTCTGGATCTTGCAAAG
GAGCTTTTAGAAATGTTTACCGCAAGTAAAATGGCCAAGGTTTTCTTTAC
TAATAGTGGATCAGAAGCCAATGACACTCAGGTCAAGCTGGTTTGGTATT
ACAATAATGCTCTTGGAAGACCAAACAAGAAGAAATTTATTGCACGACAA
AAATCGTACCATGGTTCAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCC
AGCTTTGCACCAAAAATTTGATCTGCCGGCTCCCTTTGTATTGCACACTG
ACTGCCCTCATTATTGGCGCTACGCTCATCCAG
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