CB290404

Overview
NameCB290404
Unique NameCB290404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECO81 (Succinylornithine transaminase OS=Escherichia coli O81 (strain ED1a) GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3 
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167
[Close]
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECO55 (Succinylornithine transaminase OS=Escherichia coli (strain 55989 / EAEC) GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3 
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167
[Close]
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECO45 (Succinylornithine transaminase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3 
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167
[Close]
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOSM (Succinylornithine transaminase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=astC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 3 
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  P P  +H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDF-APLPPDIH 166
[Close]
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECO27 (Succinylornithine transaminase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3 
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFSGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167
[Close]
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_SHIBS (Succinylornithine transaminase OS=Shigella boydii serotype 4 (strain Sb227) GN=astC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3 
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIMAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167
[Close]
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_SHIB3 (Succinylornithine transaminase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=astC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3 
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIMAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167
[Close]
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOSE (Succinylornithine transaminase OS=Escherichia coli (strain SE11) GN=astC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3 
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPA 731
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  LPA
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPA 163
[Close]
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOLI (Succinylornithine transaminase OS=Escherichia coli (strain K12) GN=astC PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3 
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPA 731
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  LPA
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPA 163
[Close]
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOLC (Succinylornithine transaminase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=astC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3 
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPA 731
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  LPA
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPA 163
The following BLAST results are available for this feature:
BLAST of CB290404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ASTC_ECO818.000e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO558.000e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO458.000e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOSM1.045e-1535.10Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO271.045e-1534.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_SHIBS1.365e-1534.44Succinylornithine transaminase OS=Shigella boydii ... [more]
ASTC_SHIB31.365e-1534.44Succinylornithine transaminase OS=Shigella boydii ... [more]
ASTC_ECOSE1.365e-1536.05Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOLI1.365e-1536.05Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOLC1.365e-1536.05Succinylornithine transaminase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290404 ID=CB290404; Name=CB290404; organism=Citrus sinensis; type=EST; length=783bp
GAACAGCTAAAACCGGGGAAAAAAAAAAAACACTCCGCCTTTGTTGCATG
TTAAGAGCAAAAATGGTGACCAGCAAGCTCCTTCAATCATCCCTCAAATC
CCAGATTGGTTCATTTACAAAGCATTTTTCTGCTTCCAAAAGTTTGTCGG
AGAACTTGTATCAAATCCCTTTGCTTGCCAGGTTCTATGGTACAGATGCG
TCTTTGCAAAAGGAAGATTCAACCACTAATGGGTTTAAGGGGCATGATAT
GCTGGCACCTTTCACAGCTGGGTGGCAGAGTACTGATGTGCATCCACTGG
TTATAGAAAAGTCTGAGGGTAGTTATGTTTACGACATCAATGGGAAGAAG
TATCTTGATTCTCTTTCTGGCCTATGGTGCACAGCCCTAGGGGGGAGTGA
ACCTCGCCTTGTGGCTGCTGCTACTGCACAATTGAATACCCTGCCATTTT
ACCACTCCTTCTGGAATCGTACCACAAAACCTTCTCTGGATCTTGCAAAG
GAGCTTTTAGAAATGTTTACCGCAAGTAAAATGGCCAAGGTTTTCTTTAC
TAATAGTGGATCAGAAGCCAATGACACTCAGGTCAAGCTGGTTTGGTATT
ACAATAATGCTCTTGGAAGACCAAACAAGAAGAAATTTATTGCACGACAA
AAATCGTACCATGGTTCAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCC
AGCTTTGCACCAAAAATTTGATCTGCCGGCTCCCTTTGTATTGCACACTG
ACTGCCCTCATTATTGGCGCTACGCTCATCCAG
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