CB290404

Overview
NameCB290404
Unique NameCB290404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:21..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOHS (Succinylornithine transaminase OS=Escherichia coli O9:H4 (strain HS) GN=astC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPA 731
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  LPA
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPA 163          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECODH (Succinylornithine transaminase OS=Escherichia coli (strain K12 / DH10B) GN=astC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPA 731
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  LPA
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPA 163          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECOBW (Succinylornithine transaminase OS=Escherichia coli (strain K12 / BW2952) GN=astC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPA 731
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  LPA
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPA 163          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECO8A (Succinylornithine transaminase OS=Escherichia coli O8 (strain IAI1) GN=astC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPA 731
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  LPA
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPA 163          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECO7I (Succinylornithine transaminase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGCHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECO24 (Succinylornithine transaminase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=astC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPA 731
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  LPA
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPA 163          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_SHIFL (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Shigella flexneri GN=argD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/146 (36.30%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  309 KSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            K +GS ++D  GK+Y+D   G+  TALG   P LV A   Q  TL  +H     T +P+L L ++L+E   A+   +V F NSG+EAN+T  KL  +Y      P K K IA   ++HG +L   S+ G P     F      ++H
Sbjct:   30 KGQGSRIWDQQGKEYVDFAGGIAVTALGHCHPALVNALKTQGETL--WHISNVFTNEPALRLGRKLIE---ATFAERVVFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIH 170          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_ECOLI (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Escherichia coli (strain K12) GN=argD PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/146 (36.30%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  309 KSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            K +GS ++D  GK+Y+D   G+  TALG   P LV A   Q  TL  +H     T +P+L L ++L+E   A+   +V F NSG+EAN+T  KL  +Y      P K K IA   ++HG +L   S+ G P     F      ++H
Sbjct:   30 KGQGSRIWDQQGKEYVDFAGGIAVTALGHCHPALVNALKTQGETL--WHISNVFTNEPALRLGRKLIE---ATFAERVVFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIH 170          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_ECOL6 (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Escherichia coli O6 GN=argD PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/146 (36.30%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  309 KSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            K +GS ++D  GK+Y+D   G+  TALG   P LV A   Q  TL  +H     T +P+L L ++L+E   A+   +V F NSG+EAN+T  KL  +Y      P K K IA   ++HG +L   S+ G P     F      ++H
Sbjct:   30 KGQGSRIWDQQGKEYVDFAGGIAVTALGHCHPALVNALKTQGETL--WHISNVFTNEPALRLGRKLIE---ATFAERVVFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIH 170          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_ECO57 (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Escherichia coli O157:H7 GN=argD PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 53/146 (36.30%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  309 KSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            K +GS ++D  GK+Y+D   G+  TALG   P LV A   Q  TL  +H     T +P+L L ++L+E   A+   +V F NSG+EAN+T  KL  +Y      P K K IA   ++HG +L   S+ G P     F      ++H
Sbjct:   30 KGQGSRIWDQQGKEYVDFAGGIAVTALGHCHPALVNALKTQGETL--WHISNVFTNEPALRLGRKLIE---ATFAERVVFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPSDIIH 170          
The following BLAST results are available for this feature:
BLAST of CB290404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ASTC_ECOHS1.365e-1536.05Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECODH1.365e-1536.05Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOBW1.365e-1536.05Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO8A1.365e-1536.05Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO7I1.365e-1534.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO241.365e-1536.05Succinylornithine transaminase OS=Escherichia coli... [more]
ARGD_SHIFL1.365e-1536.30Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_ECOLI1.365e-1536.30Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_ECOL61.365e-1536.30Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_ECO571.365e-1536.30Acetylornithine/succinyldiaminopimelate aminotrans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290404 ID=CB290404; Name=CB290404; organism=Citrus sinensis; type=EST; length=783bp
GAACAGCTAAAACCGGGGAAAAAAAAAAAACACTCCGCCTTTGTTGCATG
TTAAGAGCAAAAATGGTGACCAGCAAGCTCCTTCAATCATCCCTCAAATC
CCAGATTGGTTCATTTACAAAGCATTTTTCTGCTTCCAAAAGTTTGTCGG
AGAACTTGTATCAAATCCCTTTGCTTGCCAGGTTCTATGGTACAGATGCG
TCTTTGCAAAAGGAAGATTCAACCACTAATGGGTTTAAGGGGCATGATAT
GCTGGCACCTTTCACAGCTGGGTGGCAGAGTACTGATGTGCATCCACTGG
TTATAGAAAAGTCTGAGGGTAGTTATGTTTACGACATCAATGGGAAGAAG
TATCTTGATTCTCTTTCTGGCCTATGGTGCACAGCCCTAGGGGGGAGTGA
ACCTCGCCTTGTGGCTGCTGCTACTGCACAATTGAATACCCTGCCATTTT
ACCACTCCTTCTGGAATCGTACCACAAAACCTTCTCTGGATCTTGCAAAG
GAGCTTTTAGAAATGTTTACCGCAAGTAAAATGGCCAAGGTTTTCTTTAC
TAATAGTGGATCAGAAGCCAATGACACTCAGGTCAAGCTGGTTTGGTATT
ACAATAATGCTCTTGGAAGACCAAACAAGAAGAAATTTATTGCACGACAA
AAATCGTACCATGGTTCAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCC
AGCTTTGCACCAAAAATTTGATCTGCCGGCTCCCTTTGTATTGCACACTG
ACTGCCCTCATTATTGGCGCTACGCTCATCCAG
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