CB290404

Overview
NameCB290404
Unique NameCB290404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_PHOLL (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Photorhabdus luminescens subsp. laumondii GN=argD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.186e-15
Identity = 52/146 (35.62%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  309 KSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            + +GS V+D +GK+Y+D   G+   ALG   P LV     Q   L  +H     T +P+L LA++L++   A+   +VFF NSG+EAN+   KL  +Y  A   P K K IA  + +HG TL   S+ G P     F      ++H
Sbjct:   29 RGQGSRVWDQHGKEYIDFAGGIAVVALGHCHPTLVDVLKQQGEKL--WHISNIFTNEPALILAQKLID---ATFAERVFFANSGAEANEAAFKLARHYAIARHNPYKTKIIAFHQGFHGRTLFTVSVGGQPKYADGFGPKPADIIH 169          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_YERPS (Succinylornithine transaminase OS=Yersinia pseudotuberculosis GN=astC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  300 VIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY------NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            ++ + EGS ++D  GK Y+D   G+   ALG   P + AA   Q + +  +H     T +P L LAK+L++   A+   KVFF NSG+EAN+  +KL   Y      N A  +  K + +A + ++HG TL   S  G P   Q F  P P  +H
Sbjct:   26 IVVRGEGSTLWDQQGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKV--WHLGNGYTNEPVLRLAKQLID---ATFAEKVFFCNSGAEANEAALKLARKYALDNFANKAGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDF-APLPGGIH 174          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_YERPG (Succinylornithine transaminase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=astC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  300 VIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY------NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            ++ + EGS ++D  GK Y+D   G+   ALG   P + AA   Q + +  +H     T +P L LAK+L++   A+   KVFF NSG+EAN+  +KL   Y      N A  +  K + +A + ++HG TL   S  G P   Q F  P P  +H
Sbjct:   26 IVVRGEGSTLWDQQGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKV--WHLGNGYTNEPVLRLAKQLID---ATFAEKVFFCNSGAEANEAALKLARKYALDNFANKAGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDF-APLPGGIH 174          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_YERPE (Succinylornithine transaminase OS=Yersinia pestis GN=astC PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  300 VIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY------NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            ++ + EGS ++D  GK Y+D   G+   ALG   P + AA   Q + +  +H     T +P L LAK+L++   A+   KVFF NSG+EAN+  +KL   Y      N A  +  K + +A + ++HG TL   S  G P   Q F  P P  +H
Sbjct:   26 IVVRGEGSTLWDQQGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKV--WHLGNGYTNEPVLRLAKQLID---ATFAEKVFFCNSGAEANEAALKLARKYALDNFANKAGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDF-APLPGGIH 174          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_YERPA (Succinylornithine transaminase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=astC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  300 VIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY------NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            ++ + EGS ++D  GK Y+D   G+   ALG   P + AA   Q + +  +H     T +P L LAK+L++   A+   KVFF NSG+EAN+  +KL   Y      N A  +  K + +A + ++HG TL   S  G P   Q F  P P  +H
Sbjct:   26 IVVRGEGSTLWDQQGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKV--WHLGNGYTNEPVLRLAKQLID---ATFAEKVFFCNSGAEANEAALKLARKYALDNFANKAGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDF-APLPGGIH 174          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_YERP3 (Succinylornithine transaminase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=astC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  300 VIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY------NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            ++ + EGS ++D  GK Y+D   G+   ALG   P + AA   Q + +  +H     T +P L LAK+L++   A+   KVFF NSG+EAN+  +KL   Y      N A  +  K + +A + ++HG TL   S  G P   Q F  P P  +H
Sbjct:   26 IVVRGEGSTLWDQQGKSYIDFAGGIAVNALGHGHPAVRAALIEQADKV--WHLGNGYTNEPVLRLAKQLID---ATFAEKVFFCNSGAEANEAALKLARKYALDNFANKAGQQGEKNQIVAFRNAFHGRTLFTVSAGGQPKYSQDF-APLPGGIH 174          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECO5E (Succinylornithine transaminase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=astC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +  L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNESVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ASTC_ECO57 (Succinylornithine transaminase OS=Escherichia coli O157:H7 GN=astC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 746
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +  L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNESVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARUC_PSEAE (Succinylornithine transaminase/acetylornithine aminotransferase OS=Pseudomonas aeruginosa GN=aruC PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  309 KSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 719
            + EGS V+D +G++ +D   G+  T+LG + P LV A T Q   +  +H     T +P+L LA++L++   A+   +VF  NSG+EAN+   KL   Y N +  P K + IA   S+HG TL   ++ G P     F
Sbjct:   30 RGEGSRVWDQSGRELIDFAGGIAVTSLGHAHPALVKALTEQAQRI--WHVSNVFTNEPALRLARKLVD---ATFAERVFLANSGAEANEAAFKLARRYANDVYGPQKYEIIAASNSFHGRTLFTVNVGGQPKYSDGF 161          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_AQUAE (Acetylornithine aminotransferase OS=Aquifex aeolicus GN=argD PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 52/151 (34.44%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTL----PFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP 734
            P+   + +G Y+YD  GK+YLD +SG+   +LG + P+L  A   Q+  L      Y + W        +LA +L++ F      KVFF NSG+E+ +  +KL   Y    G+ NK KFI+ + S+HG T  + S +G P  H+ F+   P
Sbjct:   12 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQE------ELAHKLVKHFWTE--GKVFFANSGTESVEAAIKLARKYWRDKGK-NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVP 153          
The following BLAST results are available for this feature:
BLAST of CB290404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ARGD_PHOLL5.186e-1535.62Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ASTC_YERPS6.773e-1534.84Succinylornithine transaminase OS=Yersinia pseudot... [more]
ASTC_YERPG6.773e-1534.84Succinylornithine transaminase OS=Yersinia pestis ... [more]
ASTC_YERPE6.773e-1534.84Succinylornithine transaminase OS=Yersinia pestis ... [more]
ASTC_YERPA6.773e-1534.84Succinylornithine transaminase OS=Yersinia pestis ... [more]
ASTC_YERP36.773e-1534.84Succinylornithine transaminase OS=Yersinia pseudot... [more]
ASTC_ECO5E6.773e-1533.77Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO576.773e-1533.77Succinylornithine transaminase OS=Escherichia coli... [more]
ARUC_PSEAE6.773e-1535.77Succinylornithine transaminase/acetylornithine ami... [more]
ARGD_AQUAE6.773e-1534.44Acetylornithine aminotransferase OS=Aquifex aeolic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290404 ID=CB290404; Name=CB290404; organism=Citrus sinensis; type=EST; length=783bp
GAACAGCTAAAACCGGGGAAAAAAAAAAAACACTCCGCCTTTGTTGCATG
TTAAGAGCAAAAATGGTGACCAGCAAGCTCCTTCAATCATCCCTCAAATC
CCAGATTGGTTCATTTACAAAGCATTTTTCTGCTTCCAAAAGTTTGTCGG
AGAACTTGTATCAAATCCCTTTGCTTGCCAGGTTCTATGGTACAGATGCG
TCTTTGCAAAAGGAAGATTCAACCACTAATGGGTTTAAGGGGCATGATAT
GCTGGCACCTTTCACAGCTGGGTGGCAGAGTACTGATGTGCATCCACTGG
TTATAGAAAAGTCTGAGGGTAGTTATGTTTACGACATCAATGGGAAGAAG
TATCTTGATTCTCTTTCTGGCCTATGGTGCACAGCCCTAGGGGGGAGTGA
ACCTCGCCTTGTGGCTGCTGCTACTGCACAATTGAATACCCTGCCATTTT
ACCACTCCTTCTGGAATCGTACCACAAAACCTTCTCTGGATCTTGCAAAG
GAGCTTTTAGAAATGTTTACCGCAAGTAAAATGGCCAAGGTTTTCTTTAC
TAATAGTGGATCAGAAGCCAATGACACTCAGGTCAAGCTGGTTTGGTATT
ACAATAATGCTCTTGGAAGACCAAACAAGAAGAAATTTATTGCACGACAA
AAATCGTACCATGGTTCAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCC
AGCTTTGCACCAAAAATTTGATCTGCCGGCTCCCTTTGTATTGCACACTG
ACTGCCCTCATTATTGGCGCTACGCTCATCCAG
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