CB290404

Overview
NameCB290404
Unique NameCB290404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:21..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_BIFLO (Acetylornithine aminotransferase OS=Bifidobacterium longum GN=argD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.390e-14
Identity = 43/153 (28.10%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  300 VIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL--------GRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP 734
            V++  +G++++D++G +YLD L+G+   +LG + P+ V A   Q   +    +++   ++P ++LA +L+++  A + +KV+F NSG+E N+  +KL   Y   L        G+P   + +A    +HG T+ A S +  P + + +D   P
Sbjct:   34 VMDHGQGAHIWDVDGNEYLDFLAGIAVNSLGYAHPKWVKAVADQAAKVAHISNYF--ASEPQIELASKLVKLAGAPEGSKVYFGNSGAEGNEAALKLAKLYGRTLPGALPSIGGKP--ARILAMTHGFHGRTMGALSATWKPGIRKPYDPLVP 182          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_XYLFA (Acetylornithine aminotransferase OS=Xylella fastidiosa GN=argD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.780e-14
Identity = 51/149 (34.23%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  297 LVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR-PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD-LPAPF 737
            +V+ + +GS V+D  G+ YLD  +G+    LG  +P LVAA   Q   L  +H+     ++PSL LA+EL+++   ++  +VF  +SG+EAN+  +KLV  +  A GR P  +  +    S+HG TL A + +  P   + ++ LP  F
Sbjct:   24 VVLVRGQGSRVWDEQGRDYLDLAAGIAVCCLGHCDPDLVAALVEQAGRL--WHTSNVFYSEPSLRLAQELVDVSRFAE--RVFLCSSGTEANEAAIKLVRKWAAAQGRLPEHRTIVTFHGSFHGRTLAAVTATAQPKYQEGYEPLPGGF 168          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_PSEPK (Acetylornithine aminotransferase OS=Pseudomonas putida (strain KT2440) GN=argD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.780e-14
Identity = 50/137 (36.50%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  309 KSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 719
            + EGS V+D +G++ +D   G+   ALG   P LV A T Q NTL  +H     T +P+L LA +L++   A+   + FF NSG+E+N+   KL     +    P K + IA   S+HG TL   S+ G P     F
Sbjct:   30 RGEGSRVWDQSGRELIDFAGGIAVNALGHCHPALVKALTEQANTL--WHVSNVFTNEPALRLAHKLVD---ATFADRAFFCNSGAESNEAAFKLARRVAHDRFGPQKHEIIATVNSFHGRTLFTVSVGGQPKYSDGF 161          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_THETN (Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.277e-13
Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = 3
Query:  291 HPLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHS-FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 719
            +P+++ K EG+ V+D  G  YLD ++G+   +LG   P LV A   Q  TL    + +WN   +  ++LA+ + E    S   KVFF NSG+EAN+  +KL   Y +      + K I  + S+HG T  A + +G    H+ F
Sbjct:   16 YPIMLVKGEGTRVWDSEGNAYLDFVAGIAVNSLGHCHPALVEAIKKQAETLIHCSNLYWN---EKQIELARMISEN---SFGGKVFFANSGAEANEGAIKLARKYASLKYGGKRYKIITAKNSFHGRTFGALTATGQEKYHKGF 153          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_SYNY3 (Acetylornithine aminotransferase OS=Synechocystis sp. (strain PCC 6803) GN=argD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.277e-13
Identity = 52/149 (34.90%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  294 PLVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL-DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV-WYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP 734
            P+ I + +GS ++D  GK YLD ++G+    LG + P LV A + Q+  L   H   N    P   +LAK ++E   A    +VFF NSG+EAN+  +KLV  Y +  L    +   +  + S+HG TL   + +G P   Q FD   P
Sbjct:   43 PIAIARGQGSTLWDTEGKSYLDFVAGIATCTLGHAHPALVRAVSDQIQKL---HHVSNLYYIPEQGELAKWIVEHSCAD---RVFFCNSGAEANEAAIKLVRKYAHTVLDFLEQPVILTAKASFHGRTLATITATGQPKYQQYFDPLVP 185          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_STRCO (Acetylornithine aminotransferase OS=Streptomyces coelicolor GN=argD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.277e-13
Identity = 53/162 (32.72%), Postives = 88/162 (54.32%), Query Frame = 3
Query:  264 TAGWQSTDVHP-----LVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP 734
            T  WQ T ++      L + + EG+ ++D +GK+YLD + G+   ALG + P +V A + Q+ +L    + +    +P + LA+ LL+ F   +  KV+F NSG+EAN+   K+        GRP+    +A +  +HG T+ A +L+G P   + F LP P
Sbjct:    7 TERWQGTLMNNYGTPRLPLVRGEGARLWDADGKEYLDFVGGIAVNALGHAHPAVVDAVSRQIASLGHVSNLF--IAEPPVALAERLLQHF--GRDGKVYFCNSGAEANEGAFKI----GRLTGRPH---MVATRGGFHGRTMGALALTGQPGKQEPF-LPLP 156          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_ARCFU (Acetylornithine aminotransferase OS=Archaeoglobus fulgidus GN=argD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.277e-13
Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  297 LVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD 722
            +VIE+ EG YVYD+NGK+YLD ++G+   ++G     LV     QL  L    + +   T P ++LA++L E+   + M + FF NSG+EA +  +K   +   A GR   KKF++    +HG T+ A S++      + F+
Sbjct:   20 VVIERGEGCYVYDVNGKRYLDLVAGIATVSIGHCNSHLVERLKEQLEKLIHISNLY--YTTPQVELAEKLSEI---AGMDRFFFCNSGAEAVEAALK---FARRATGR---KKFVSFTGDFHGRTMGALSVTHKEKFRKPFE 150          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD1_PSESM (Acetylornithine aminotransferase 1 OS=Pseudomonas syringae pv. tomato GN=argD1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.277e-13
Identity = 51/137 (37.23%), Postives = 70/137 (51.09%), Query Frame = 3
Query:  309 KSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 719
            +  GS V+D  G++ +D   G+    LG   P LV A T Q N L  +H     T +P+L LAK+L++   A +   VFF NSG+EAN+   KL     + L  P K + IA   S+HG TL   S+ G P     F
Sbjct:   30 RGAGSRVWDQAGRELVDFSGGIAVNVLGHCHPALVGALTEQANNL--WHVSNVFTNEPTLRLAKKLVDSTFAER---VFFCNSGAEANEAAFKLARRVAHDLYGPEKYEIIAAVNSFHGRTLFTVSVGGQPKYSDGF 161          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_XYLFT (Acetylornithine aminotransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=argD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13
Identity = 51/149 (34.23%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  297 LVIEKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR-PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD-LPAPF 737
            +V+ + +GS V+D  G+ YLD  +G+    LG  +P LVAA   Q   L  +H+     ++PSL LA+EL+++   ++  +VF  +SG+EAN+  +KLV  +  A GR P  +  +  + S+HG TL A + +  P   + ++ LP  F
Sbjct:   24 VVLVRGQGSRVWDEQGRDYLDLAAGIAVCCLGHCDPDLVAALVEQAGRL--WHTSNVFYSEPSLRLAQELVDVSRFAE--RVFLCSSGTEANEAAIKLVRKWAAAQGRLPEHRTIVTFRGSFHGRTLGAVTATAQPKYQEGYEPLPGGF 168          
BLAST of CB290404 vs. ExPASy Swiss-Prot
Match: ARGD_PROMP (Acetylornithine aminotransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=argD PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.668e-13
Identity = 44/140 (31.43%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  306 EKSEGSYVYDINGKKYLDSLSGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAK-VFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD 722
            +K  G +++D  GKKYLD+++G+   +LG S   L    +AQL  +    + +       ++  +EL +  T    A+ VFF NSG+EAN++ +KL+  Y N + +  +   +A + S+HG TL   S +G P   + F+
Sbjct:   36 KKGNGCWLWDEKGKKYLDAVAGIATCSLGHSNRILRKKLSAQLKKVQHISNLYK------IEEQEELSKYLTKQSCAESVFFCNSGAEANESAIKLIKKYGNTVHKGKESFILAAESSFHGRTLATLSATGQPKYQKGFE 169          
The following BLAST results are available for this feature:
BLAST of CB290404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ARGD_BIFLO4.390e-1428.10Acetylornithine aminotransferase OS=Bifidobacteriu... [more]
ARGD_XYLFA9.780e-1434.23Acetylornithine aminotransferase OS=Xylella fastid... [more]
ARGD_PSEPK9.780e-1436.50Acetylornithine aminotransferase OS=Pseudomonas pu... [more]
ARGD_THETN1.277e-1334.03Acetylornithine aminotransferase OS=Thermoanaeroba... [more]
ARGD_SYNY31.277e-1334.90Acetylornithine aminotransferase OS=Synechocystis ... [more]
ARGD_STRCO1.277e-1332.72Acetylornithine aminotransferase OS=Streptomyces c... [more]
ARGD_ARCFU1.277e-1334.51Acetylornithine aminotransferase OS=Archaeoglobus ... [more]
ARGD1_PSESM1.277e-1337.23Acetylornithine aminotransferase 1 OS=Pseudomonas ... [more]
ARGD_XYLFT1.668e-1334.23Acetylornithine aminotransferase OS=Xylella fastid... [more]
ARGD_PROMP1.668e-1331.43Acetylornithine aminotransferase OS=Prochlorococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290404 ID=CB290404; Name=CB290404; organism=Citrus sinensis; type=EST; length=783bp
GAACAGCTAAAACCGGGGAAAAAAAAAAAACACTCCGCCTTTGTTGCATG
TTAAGAGCAAAAATGGTGACCAGCAAGCTCCTTCAATCATCCCTCAAATC
CCAGATTGGTTCATTTACAAAGCATTTTTCTGCTTCCAAAAGTTTGTCGG
AGAACTTGTATCAAATCCCTTTGCTTGCCAGGTTCTATGGTACAGATGCG
TCTTTGCAAAAGGAAGATTCAACCACTAATGGGTTTAAGGGGCATGATAT
GCTGGCACCTTTCACAGCTGGGTGGCAGAGTACTGATGTGCATCCACTGG
TTATAGAAAAGTCTGAGGGTAGTTATGTTTACGACATCAATGGGAAGAAG
TATCTTGATTCTCTTTCTGGCCTATGGTGCACAGCCCTAGGGGGGAGTGA
ACCTCGCCTTGTGGCTGCTGCTACTGCACAATTGAATACCCTGCCATTTT
ACCACTCCTTCTGGAATCGTACCACAAAACCTTCTCTGGATCTTGCAAAG
GAGCTTTTAGAAATGTTTACCGCAAGTAAAATGGCCAAGGTTTTCTTTAC
TAATAGTGGATCAGAAGCCAATGACACTCAGGTCAAGCTGGTTTGGTATT
ACAATAATGCTCTTGGAAGACCAAACAAGAAGAAATTTATTGCACGACAA
AAATCGTACCATGGTTCAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCC
AGCTTTGCACCAAAAATTTGATCTGCCGGCTCCCTTTGTATTGCACACTG
ACTGCCCTCATTATTGGCGCTACGCTCATCCAG
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