CB290405

Overview
NameCB290405
Unique NameCB290405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.358e-43
Identity = 88/169 (52.07%), Postives = 108/169 (63.91%), Query Frame = -3
Query:  190 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 696
            + + ++FD+ + GKP GRI +  F   +PKTAENFRAL TGEKG         YKGS FHRIIP FM Q            +SIYGEKF DEN   KHTG G+LSMANAGP+TNGSQFFI T  T WLDG+HV FGKV   +++V  +E  G +N     K+ +AD G+
Sbjct:    2 VNSVIFFDITVDGKPLGRISIKQFADKIPKTAENFRALSTGEKGF-------RYKGSCFHRIIPGFMCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIH_NEUCR (Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa GN=cyp-3 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.317e-43
Identity = 96/169 (56.80%), Postives = 109/169 (64.50%), Query Frame = -3
Query:  190 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEK-FPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE---AEGRQNGTPKSKVVVADSGE 684
            V+FD+ + G+P GRI   LF   VP+TAENFR  CTGE      G+P  YKGS FHRIIP+FM Q              IYG K F DENF LKH  PGLLSMANAGP+TNGSQFFITTV T +LDG+HVVFGKV+ GMDVV K+E      R    P   VV+A  GE
Sbjct:   14 VFFDITLGGEPLGRITFELFKDVVPRTAENFRQFCTGESK-NNLGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIYGTKSFADENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVKKMENTKTGYRGKDVPNLDVVIAQCGE 181          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.150e-42
Identity = 90/181 (49.72%), Postives = 116/181 (64.09%), Query Frame = -3
Query:  190 IQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 732
            ++ KK  +NL     +V+FD+ I     GRIVM L    VP+TAENFRALCTG++G G       Y    FHR+IP FM Q           G+SIYG KF DENF+L+H G G+LSMAN+GP+TNGSQFFI T    WLDG+HVVFG+V+ G +VV K+E+ G ++G  K  V ++  GE
Sbjct:    8 MRTKKQKRNLP----RVFFDIRIGNADRGRIVMELRSDIVPRTAENFRALCTGDRGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGE 177          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.150e-42
Identity = 88/169 (52.07%), Postives = 107/169 (63.31%), Query Frame = -3
Query:  190 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 696
            + + V+FD+ + GKP GRI + LF   + KTAENFRAL TGEKG         YKGS FHRIIP FM Q            +SIYGEKF DEN   KHTG G+LSMANAGP+TNGSQFFI    T WLDG+HV FGKV   +++V  +E  G +N     K+ +AD G+
Sbjct:    2 VNSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGF-------RYKGSCFHRIIPGFMCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.962e-42
Identity = 96/169 (56.80%), Postives = 108/169 (63.91%), Query Frame = -3
Query:  190 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEK-FPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG---RQNGTPKSKVVVADSGE 684
            V+FD+ I G+P GRI   LF   VPKTAENFR  CTGE      G+P  YKGS FHRIIP+FM Q              I+G K F DENF LKH  PGLLSMANAGP+TNGSQFFITTV T +LD +HVVFGKV  GMDVV K+EA     R    P   VV++  GE
Sbjct:   14 VFFDITIGGEPLGRITFELFKDVVPKTAENFRQFCTGESKT-PVGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGE 181          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.962e-42
Identity = 90/166 (54.22%), Postives = 109/166 (65.66%), Query Frame = -3
Query:  190 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGE 684
            V+FD+ I   PAGRI M LF    PKTAENFR LCTGE  I  +  P  YK +TFHR+IP FM+Q             SIYG +F DENFK+KHTGPGLLSMAN+GP+TNG QFFITT    +LDG+H VFG+V+ G+  V K+E      N  PK +V +A+ GE
Sbjct:   15 VFFDISIGDTPAGRIKMELFDDITPKTAENFRQLCTGEHRI--NSVPQGYKKATFHRVIPQFMVQGGDFVRGDGTGSFSIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENVPTGANNRPKLQVRIAECGE 178          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.962e-42
Identity = 94/172 (54.65%), Postives = 110/172 (63.95%), Query Frame = -3
Query:  193 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKS--KVVVADSG 702
            KE +  VYFDV    +  GRIVM L    VPKTA+NFR LC   KG G       YKGSTFHRIIP FM+Q           G SIYGEKFPDENF+LKHT  G+LSMAN G  TNGSQFFIT   T WLD +HVVFG+V+ GMDVV+K+   G ++G  K   ++ + D G
Sbjct:    3 KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 167          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.562e-42
Identity = 89/174 (51.15%), Postives = 108/174 (62.07%), Query Frame = -3
Query:  190 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGE 708
            N   +   V+FDV I G+  GR+ + LF   VPKTAENFR  CTGE    K G P+ YKGSTFHR+I  FM+Q             SIY   F DENFKL+H+ PGLLSMAN+GP TNG QFFIT     WLDG+HVVFGK++ G+ V+ K+E      N  PK  VV++  GE
Sbjct:    5 NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.562e-42
Identity = 89/174 (51.15%), Postives = 108/174 (62.07%), Query Frame = -3
Query:  190 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGE 708
            N   +   V+FDV I G+  GR+ + LF   VPKTAENFR  CTGE    K G P+ YKGSTFHR+I  FM+Q             SIY   F DENFKL+H+ PGLLSMAN+GP TNG QFFIT     WLDG+HVVFGK++ G+ V+ K+E      N  PK  VV++  GE
Sbjct:    5 NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.346e-42
Identity = 88/164 (53.66%), Postives = 104/164 (63.41%), Query Frame = -3
Query:  193 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 684
            V+FDV+  G    +IV  L+   VPKTA NFR L TG +G G       YKGS FHR+I  FM Q           G+SIYGEKF DENFKLKHT P LLSMANAGP+TNGSQFFIT V   WLDG+HVVFG+V+ G D +   +    Q G PK+ + + DSG
Sbjct:    4 VFFDVQFGGDAPKKIVFKLYDDVVPKTAANFRELATGSRGFG-------YKGSVFHRVITDFMAQGGDFTNFNGTGGKSIYGEKFADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTLELFKKNSSQQGKPKTTIKIVDSG 160          
The following BLAST results are available for this feature:
BLAST of CB290405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
PAL4A_HUMAN1.358e-4352.07Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIH_NEUCR2.317e-4356.80Peptidyl-prolyl cis-trans isomerase H OS=Neurospor... [more]
PPIE_SCHJA1.150e-4249.72Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PAL4B_HUMAN1.150e-4252.07Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
PPIH_GIBZE1.962e-4256.80Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPIH_CRYNE1.962e-4254.22Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
CYPH_ENCCU1.962e-4254.65Peptidyl-prolyl cis-trans isomerase OS=Encephalito... [more]
PPIH_HUMAN2.562e-4251.15Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN2.562e-4251.15Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPIA_PARPR3.346e-4253.66Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290405 ID=CB290405; Name=CB290405; organism=Citrus sinensis; type=EST; length=851bp
TTTTTTTTTTTTGAGAAAGGATCCCCTTAAAATGAAGCACCAGCTTGGCA
AACAACCTAGGACATTTTAAAATGTCTATTACATGATAAATAGGCAAATT
ATGAGTATCTTCATGAAGGTTGAAAAGACGAGAGGACTAAAAAGGTGTAT
AGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGTTCACCGCTGT
CTGCAACGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCCTTCAGCT
TCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAAATACAAC
ATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAGAATTGTG
AACCATTGGTGTCTGGACCAGCATTTGCCATTGACAAAAGCCCTGGGCCA
GTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCATAAATTGA
CTCTCCACCTCTTCCATCACCAAGAGTGAAATCACCTCCTTGAAGCATAA
AGCTGGGAATAATCCTATGGAACGTACTTCCCTTGTAGTGGAGTGGCTTC
CCGCTCTTGCCAATCCCTTTCTCCCCTGTGCACAAAGCTCGGAAATTTTC
TGCAGTTTTAGGGACTGCCTTTCCAAAGAGACCCATTACAATACGTCCGG
CAGGTTTTCCAGCAATCTCAACGTCAAAGTAAACTTTGTTTGTGATTTCT
TTCAAATTCTGATCCGATTTCTTCGCCTGAATTGAAGAGAAAGTGGCCAA
CAGGACAATAGCCCATAGCATCGTGAGTGGAAGAAATTTTGTCGAAGCCA
TGTATCACTTCGTTGTTTCTCGTTTCGCAGTCACTCACTTTGGGGTTCCG
C
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