CB290405

Overview
NameCB290405
Unique NameCB290405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.707e-42
Identity = 89/171 (52.05%), Postives = 107/171 (62.57%), Query Frame = -3
Query:  190 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 702
            KE    V+FD+    +P GRI M LF   VPKTAENFRALCTGEKG G       +K S FHR+IP F+ Q           G SIYG+KF DENF +KHTGPGLLSMAN G DTN SQFFIT      LD +HVVFG V  GMD V K+E+ G   G+   ++++ + G+
Sbjct:  921 KETNPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFG-------FKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQ 1084          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.707e-42
Identity = 89/158 (56.33%), Postives = 106/158 (67.09%), Query Frame = -3
Query:  220 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGK--PLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPK 687
            K YFD+ I G P GRIV  L+   VPKTAENF  LC G+ G+ KS    PL YKGS FHR+I  FM+Q           GESIYGEKF DENF++KH  P LLSMANAGP+TNGSQ FIT V T  LDG+HVVFG+V+ G  +V  +E +  ++GT K
Sbjct:    5 KAYFDISIGGTPKGRIVFELYKDVVPKTAENFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDENFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDGTDK 162          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.454e-42
Identity = 88/171 (51.46%), Postives = 109/171 (63.74%), Query Frame = -3
Query:  190 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 702
            K+    V+FDV   G+P GRI+M LF   VP+TAENFRALCTGEKG G       +K S FHR++P F+ Q           G+SIYG+KF DENF LKHTGPGLLSMAN G +TN SQFFIT      LD +HVVFG V  GMD V K+E+ G   G+   ++ + + G+
Sbjct: 2889 KDTNPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGEKGFG-------FKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQ 3052          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.661e-41
Identity = 103/203 (50.74%), Postives = 121/203 (59.61%), Query Frame = -3
Query:  193 ATFSSIQAKKSDQNLKEITNKVYFDVEIAG-------KP-------AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVL--SGMDVVYKVEAEGRQNGTPK--SKVVVADSG 747
            ATFS  +A     +   I +KV+FD+E  G       KP       +GRI   L+   VPKTA NF+ LCTG+ G G       YKGS+FHRIIP FMLQ           G+SIYGEKF DENF  KH  PGLLSMANAGP+TNGSQFF+TTV TSWLDGRHVVFG+V     M VV  +EA G  +G  +   K  + D G
Sbjct:   29 ATFSCARAFSQTSS---IMSKVFFDLEWEGPVLGPNNKPTSEIKAQSGRINFTLYDDVVPKTARNFKELCTGQNGFG-------YKGSSFHRIIPEFMLQGGDFTRGNGTGGKSIYGEKFADENFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCG 221          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPID_KLULA (Peptidyl-prolyl cis-trans isomerase D OS=Kluyveromyces lactis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.833e-41
Identity = 93/174 (53.45%), Postives = 106/174 (60.92%), Query Frame = -3
Query:  193 LKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGK--PLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVVADSG 705
            + E   K +FD+ I GKPAGRIV  L+   VPKTAENF  LC G  G  KS    PL YKGS FHR+I SFM Q           GESIYGEKF DENF LKH  P LLSMANAG +TNGSQ FIT V T  LDG+HVVFG+V+ G  +V  +E         P  +V + D G
Sbjct:    1 MSETRPKTFFDISIGGKPAGRIVFELYSDVVPKTAENFLKLCEGNSGFAKSKPDIPLSYKGSIFHRVIKSFMCQFGDFTNFNGTGGESIYGEKFEDENFTLKHDKPFLLSMANAGANTNGSQCFITCVPTPHLDGKHVVFGEVIQGKRLVRTIENNATDEADKPAKEVKIEDCG 174          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 8.241e-41
Identity = 88/171 (51.46%), Postives = 107/171 (62.57%), Query Frame = -3
Query:  190 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 702
            KE    V+FDV   G+P GRI M LF   VP+TAENFRALCTGEKG G       +K S FHR+IP F+ Q           G+SIYG+KF DENF +KHTGPGLLSMAN G +TN SQF IT      LD +HVVFG V  GMD V K+E+ G   G+   ++ + + G+
Sbjct: 3060 KETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQ 3223          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.836e-40
Identity = 89/166 (53.61%), Postives = 106/166 (63.86%), Query Frame = -3
Query:  190 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 687
            K +FD++   +  GRI+  LF   VP T  NFR LCT +   G       YKGS FHRIIP FM Q           G+SIYG KF DENF  KH    L SMANAGP+TNGSQFFITTV  SWLDG+HVVFGKV+SG+DVV K+E+ G  +G P  K+++ D GE
Sbjct:    4 KAFFDIKAGDERLGRIIFELFND-VPDTTRNFRELCTHKNNFG-------YKGSVFHRIIPGFMCQGGDFTNGDGTGGKSIYGNKFKDENFNHKHEAFSL-SMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.836e-40
Identity = 90/173 (52.02%), Postives = 110/173 (63.58%), Query Frame = -3
Query:  190 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGE 702
            K+   +V+ DV I G  AGRIVM L+    P+T  NF  LCTG  G GK SGKPLHYKGSTFHR+I +FM+Q           GESIYG  F DE F +KH  P ++SMAN GP+TNGSQFFITT     L+  HVVFGKV+SG +VV K+E  +      P + VV+ + GE
Sbjct:    3 KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGE 175          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.398e-40
Identity = 87/163 (53.37%), Postives = 106/163 (65.03%), Query Frame = -3
Query:  193 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 681
            YFD+ IA +PAGR+   LF   VPKTA NF+ LC G+K   ++G  L Y GS+FHR I  FMLQ           GESIYGEKF DENF+LKH  P LLSMANAGP TNGSQFFITTV T  LDG+HVVFG+V+    +V ++E     +  P   V ++ +G
Sbjct:    7 YFDITIANEPAGRLTFELFDDVVPKTANNFKHLCIGDK-TNEAGVKLAYAGSSFHRCIKGFMLQGGDFTRGDGTGGESIYGEKFEDENFELKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTSDRPDQAVTISSAG 168          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.132e-40
Identity = 87/167 (52.10%), Postives = 109/167 (65.27%), Query Frame = -3
Query:  190 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEK-FPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSGE 684
            V+ D+ I G+  GRI + LF   VPKTAENFR  CTGE  +G + KP+ YK STFHRII  FM+Q             +I+  + FPDENF LKH  PGLLSMANAG D+NG QFFITTV   +LDG+HVVFG+V+ G D+V ++E+     N  PKS V + + GE
Sbjct:    7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGET-LGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIVECGE 172          
The following BLAST results are available for this feature:
BLAST of CB290405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
RBP2_BOVIN5.707e-4252.05E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPID_CANGA5.707e-4256.33Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
RBP2_MOUSE7.454e-4251.46E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
CYPH_NEUCR1.661e-4150.74Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPID_KLULA2.833e-4153.45Peptidyl-prolyl cis-trans isomerase D OS=Kluyverom... [more]
RBP2_HUMAN8.241e-4151.46E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
PPIA_SCHMA1.836e-4053.61Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
CYP1_BRUMA1.836e-4052.02Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPID_CRYNE2.398e-4053.37Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPIH_SCHPO3.132e-4052.10Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290405 ID=CB290405; Name=CB290405; organism=Citrus sinensis; type=EST; length=851bp
TTTTTTTTTTTTGAGAAAGGATCCCCTTAAAATGAAGCACCAGCTTGGCA
AACAACCTAGGACATTTTAAAATGTCTATTACATGATAAATAGGCAAATT
ATGAGTATCTTCATGAAGGTTGAAAAGACGAGAGGACTAAAAAGGTGTAT
AGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGTTCACCGCTGT
CTGCAACGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCCTTCAGCT
TCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAAATACAAC
ATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAGAATTGTG
AACCATTGGTGTCTGGACCAGCATTTGCCATTGACAAAAGCCCTGGGCCA
GTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCATAAATTGA
CTCTCCACCTCTTCCATCACCAAGAGTGAAATCACCTCCTTGAAGCATAA
AGCTGGGAATAATCCTATGGAACGTACTTCCCTTGTAGTGGAGTGGCTTC
CCGCTCTTGCCAATCCCTTTCTCCCCTGTGCACAAAGCTCGGAAATTTTC
TGCAGTTTTAGGGACTGCCTTTCCAAAGAGACCCATTACAATACGTCCGG
CAGGTTTTCCAGCAATCTCAACGTCAAAGTAAACTTTGTTTGTGATTTCT
TTCAAATTCTGATCCGATTTCTTCGCCTGAATTGAAGAGAAAGTGGCCAA
CAGGACAATAGCCCATAGCATCGTGAGTGGAAGAAATTTTGTCGAAGCCA
TGTATCACTTCGTTGTTTCTCGTTTCGCAGTCACTCACTTTGGGGTTCCG
C
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