CB290405

Overview
NameCB290405
Unique NameCB290405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:23..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 1.551e-47
Identity = 99/167 (59.28%), Postives = 115/167 (68.86%), Query Frame = -3
Query:  190 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 687
            +V+FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKG G + GKPLH+KG  FHRII  FM+Q           GESIYGEKF DENF  KH   GLLSMANAGP+TNGSQFFITTV T  LDG+HVVFG+V+ G+ V   +E        P    V+A+ GE
Sbjct:   17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGE 183          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.551e-47
Identity = 95/165 (57.58%), Postives = 113/165 (68.48%), Query Frame = -3
Query:  190 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            VYFDV   G+  G+I   L+   VPKTAENFRALCTGEKG G       YKGS FHR+IP FMLQ           G+SIYG KF DENF  +H  PGLLSMANAGP+TNGSQFFITTV   WLDG+HVVFG+V  G+D+V K+E+ G  +G    K+V+ +SG+
Sbjct:    4 VYFDVSADGQKLGKITFKLYDDVVPKTAENFRALCTGEKGFG-------YKGSIFHRVIPQFMLQGGDFTNFNGTGGKSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQ 161          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.025e-47
Identity = 99/170 (58.24%), Postives = 119/170 (70.00%), Query Frame = -3
Query:  190 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGE 696
            I NKV+F ++    P GR+V  L+   VPKTAENFRALCTGEKGIGKSGKPLHYKGS+FHR+I +FM+Q           GESIYG  F DENF +KH   G LSMANAG +TNGSQFFITT  T  L+G H VFG+V+ G D+V KVE AE  ++  PK+  V+ D G+
Sbjct:    5 IRNKVFFQIKQGNTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQ 173          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.454e-47
Identity = 98/167 (58.68%), Postives = 116/167 (69.46%), Query Frame = -3
Query:  190 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 690
            ++VY D++I    AGRI + L G  VPKTAENFRALCTGE G G       YK S+FHRIIP FM Q           G+SIYG KF DENF LKHTGPG LSMANAG +TNGSQFFI T  T+WLDG+HVVFG+V+SGM+VV ++E  G  +G P  +VV+ D GE
Sbjct:  155 SRVYLDIQIGNTLAGRIEIELRGDVVPKTAENFRALCTGEAGFG-------YKKSSFHRIIPQFMCQGGDFTKGNGTGGKSIYGGKFEDENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGE 314          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.454e-47
Identity = 99/166 (59.64%), Postives = 113/166 (68.07%), Query Frame = -3
Query:  190 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 687
            K +FD+ I GKPAGRIV  LF   VPKT ENFRALCTGEKG G       YKGS FHRIIP FM Q           G+SIYG KF DENF  KH+ P +LSMANAG +TNGSQFFITT  TSWLDG+HVVFG+V SG DVV  +EA G  +G    +V++ D G+
Sbjct:    4 KCFFDISIGGKPAGRIVFALFDD-VPKTVENFRALCTGEKGFG-------YKGSKFHRIIPGFMCQGGDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQ 161          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 4.512e-47
Identity = 104/183 (56.83%), Postives = 123/183 (67.21%), Query Frame = -3
Query:  190 SIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 735
            S QAK S+ +      +V+FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKGIG + GKPLH+KG  FHRII  FM+Q           GESIYGEKF DENF  KH   GLLSMANAG +TNGSQFFITTV T  LDG+HVVFG+V+ G+ V   +E    +   P    V+A+ GE
Sbjct:    5 SPQAKPSNPS----NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGE 183          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.696e-47
Identity = 103/201 (51.24%), Postives = 126/201 (62.69%), Query Frame = -3
Query:  190 PLTMLWAIVLLATFSSIQAKKSDQNLKE---ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-NGTPKSKVVVADSGE 780
            P  +L A++ L   + + +  S    K    +T+KV+FDV I  K  GRIV+GLFG  VPKT ENF AL TGEKG G       YKGS FHR+I  FM+Q           G SIYGE FPDENFKLKH G G +SMANAGPDTNGSQFFIT    +WLDG+HVVFGKVL GM VV+ +E +    +  P +   + +SG+
Sbjct:    5 PRLLLPAVLCLGLGALVSSSGSSGVRKRGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGK 198          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.696e-47
Identity = 100/188 (53.19%), Postives = 126/188 (67.02%), Query Frame = -3
Query:  193 LLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVVADSG 753
            LL    +I A  ++     +T+KV+FD+EI G+P G+IV+GLFG+ VPKT +NF  L    +G G       Y GS FHR+I +FM+Q           G SIYGE+F DENFKL+H GPG LSMANAG DTNGSQFFITT  TSWLDG+HVVFGK+L GMDVV ++EA  +  G  P   VV+A++G
Sbjct:    5 LLFFVLAILALSAEARGPRVTDKVFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEG-------YVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAG 185          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.005e-46
Identity = 95/180 (52.78%), Postives = 118/180 (65.56%), Query Frame = -3
Query:  190 QAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 729
            Q++    +   +  KV+FD  + G   GRI   L+   VPKTAENFRALCTGEKG G       YKG  FHRIIP FM+Q           G+SIYG KF DENF  KH   GLLSMANAGP+TNGSQFFITTV   WLDG+HVVFG+V  GMD+V  +E+ G  +G P++++V+ ++GE
Sbjct:    9 QSRLFSNSASRLGKKVFFDPAVNGTKIGRIEFELYDNVVPKTAENFRALCTGEKGWG-------YKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGE 181          
BLAST of CB290405 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.313e-46
Identity = 103/197 (52.28%), Postives = 123/197 (62.44%), Query Frame = -3
Query:  190 LTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-NGTPKSKVVVADSGE 777
            L ++  + L A   S  A    +    +T KV+FDV I  K  GRIV+GLFGK VPKT ENF AL TGEKG G       YKGS FHR+I  FM+Q           G SIYGE FPDENFKLKH G G +SMANAGPDTNGSQFFIT    +WLDG+HVVFGKVL GM VV+ +E +    +  P +   + +SG+
Sbjct:    9 LPLVLCVGLSALVPSAGASGFRKRGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIKDFMIQGGDFTRGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPFTDCSIVNSGK 198          
The following BLAST results are available for this feature:
BLAST of CB290405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
PPID_RAT1.551e-4759.2840 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPIA_CANAL1.551e-4757.58Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
PPID_DICDI2.025e-4758.24Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPIE_RHIOR3.454e-4758.68Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPIA_ECHGR3.454e-4759.64Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPID_HUMAN4.512e-4756.8340 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPIC_MOUSE7.696e-4751.24Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
CYP6_CAEEL7.696e-4753.19Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
CYPC_YEAST1.005e-4652.78Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPIC_BOVIN1.313e-4652.28Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290405 ID=CB290405; Name=CB290405; organism=Citrus sinensis; type=EST; length=851bp
TTTTTTTTTTTTGAGAAAGGATCCCCTTAAAATGAAGCACCAGCTTGGCA
AACAACCTAGGACATTTTAAAATGTCTATTACATGATAAATAGGCAAATT
ATGAGTATCTTCATGAAGGTTGAAAAGACGAGAGGACTAAAAAGGTGTAT
AGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGTTCACCGCTGT
CTGCAACGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCCTTCAGCT
TCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAAATACAAC
ATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAGAATTGTG
AACCATTGGTGTCTGGACCAGCATTTGCCATTGACAAAAGCCCTGGGCCA
GTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCATAAATTGA
CTCTCCACCTCTTCCATCACCAAGAGTGAAATCACCTCCTTGAAGCATAA
AGCTGGGAATAATCCTATGGAACGTACTTCCCTTGTAGTGGAGTGGCTTC
CCGCTCTTGCCAATCCCTTTCTCCCCTGTGCACAAAGCTCGGAAATTTTC
TGCAGTTTTAGGGACTGCCTTTCCAAAGAGACCCATTACAATACGTCCGG
CAGGTTTTCCAGCAATCTCAACGTCAAAGTAAACTTTGTTTGTGATTTCT
TTCAAATTCTGATCCGATTTCTTCGCCTGAATTGAAGAGAAAGTGGCCAA
CAGGACAATAGCCCATAGCATCGTGAGTGGAAGAAATTTTGTCGAAGCCA
TGTATCACTTCGTTGTTTCTCGTTTCGCAGTCACTCACTTTGGGGTTCCG
C
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