CB290406

Overview
NameCB290406
Unique NameCB290406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPID_USTMA (Peptidyl-prolyl cis-trans isomerase D OS=Ustilago maydis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.754e-39
Identity = 87/171 (50.88%), Postives = 106/171 (61.99%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGR-----IVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVVADSGE 679
            VY D+     PA R     IV+ L+   VP+TAENFR LCT    +  +G+PL ++ S FHR+IP FM+Q            ESIYGEKF DE+   KH  P LLSMANAG +TNGSQFFITTV T  LDG+HVVFG+VL G  VV +VE+ E   +  PK  V + D GE
Sbjct:   15 VYLDLAFGSSPASRPGSNRIVLELYADRVPRTAENFRVLCTNTSKLASTGQPLSFRNSIFHRVIPKFMIQGGDFTRADGTGGESIYGEKFQDEDLTGKHDVPFLLSMANAGANTNGSQFFITTVPTPHLDGKHVVFGRVLKGKGVVRRVESVETVASDRPKEDVKIVDCGE 185          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.754e-39
Identity = 87/163 (53.37%), Postives = 102/163 (62.58%), Query Frame = 2
Query:  188 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 676
            YF + I GK    I   LF   VPKT +NF +LC G +   K G+ L YKGS FHR+I +FMLQ            ESIYGEKF DENF+LKH  P LLSMANAGP+TNGSQFFITTV T  LDG+HVVFGKV+ G   V  +E    +N  P   VV+ + G
Sbjct:    6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFE---KDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.282e-38
Identity = 86/167 (51.50%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  182 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGI--GKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 676
            K YFD+ I GKPAGR+V  ++    PKTAENF  LC G+ G    K G PL Y+GS FHR+I  FM Q            ESIYGEKF DENF  KH  P LLSMANAGP+TNGSQ FIT   T  LDG+HVVFG+V+ G  VV  +E +      P + V +   G
Sbjct:    6 KTYFDLSIGGKPAGRVVFEVYSDVTPKTAENFVRLCAGDAGECRTKPGVPLCYQGSLFHRVIKGFMCQFGDFTNGDGTGGESIYGEKFEDENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQETAADRPLADVRIDACG 172          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.855e-38
Identity = 82/166 (49.40%), Postives = 101/166 (60.84%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGE-KFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+ + G P GRI M LF    P+TAENFR  CTGE      GKP  YK S FHR+I  FM+Q             +IYG  KF DENF LKH   G+LSMAN+GP+TNG QFFITT  T +L+G+HVVFG+V+ GMD+V  +E        P   V++   GE
Sbjct:   16 VFFDIALGGVPLGRIKMELFADVTPRTAENFRRFCTGESK-NSQGKPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQDVIITQCGE 180          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.851e-37
Identity = 81/166 (48.80%), Postives = 100/166 (60.24%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGE-KFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+ + G+  GRI M LF    P+TAENFR  CTGE      G+P  YK S FHR+I  FM+Q             +IYG  +F DENF LKH  PGLLSMAN+GP+TNG QFFITT  T +L+ +HVVFG+V+ GMDVV  +E        P   V +   GE
Sbjct:   16 VFFDITLGGESLGRIKMELFTSITPRTAENFRQFCTGESK-SPQGRPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGE 180          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 5.385e-37
Identity = 80/145 (55.17%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  188 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE 619
            +FD+EI  +P GRI+  LF    PKT +NF  LC+GEKG+GK+ GK L YKGSTFHR++ +FM+Q            ESIYG  F DENF LKH    LLSMAN G  TNGSQFFITT     LDG HVVFG V+SG +V+ ++E
Sbjct:   10 HFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIE 154          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.385e-37
Identity = 80/145 (55.17%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  188 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE 619
            +FD+EI  +P GRI+  LF    PKT +NF  LC+GEKG+GK+ GK L YKGSTFHR++ +FM+Q            ESIYG  F DENF LKH    LLSMAN G  TNGSQFFITT     LDG HVVFG V+SG +V+ ++E
Sbjct:   10 HFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIE 154          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.033e-37
Identity = 82/167 (49.10%), Postives = 100/167 (59.88%), Query Frame = 2
Query:  182 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGE 679
            + +FD+ I G+PAGRIV  L+    P+T ENFRA CTGE G   +G    Y+GS FHR+I  FM+Q             SIYG  F DEN  LKH  P LLSMAN GPDTNGSQFFIT+     LDG+H VFG+V+ G++VV  +E  E      P  KV +   GE
Sbjct:   10 RAFFDISINGEPAGRIVFSLWNHCCPRTVENFRAFCTGELG-KMNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTGGYSIYGRTFDDENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENLETGNEDKPVCKVEITHCGE 175          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.491e-36
Identity = 84/198 (42.42%), Postives = 116/198 (58.59%), Query Frame = 2
Query:   95 TMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKL--KHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGE 679
            ++L  I+L + F ++ +  S      +T+++Y DV+   KP GRI  GLFGK  PKT  NFR +C   +GI  +     Y GS FHR++  F++Q             SIYG+ FPDE+  L  +H  PG L MAN GPDTNG QF++TTV   WLDG+H VFGKVL GMD +Y +E  +   +  P   VV+++ GE
Sbjct:    3 SLLNRIILCSAFLAVASGLSFT----VTSRIYMDVKHNKKPVGRITFGLFGKLAPKTVANFRHICL--RGINGTS----YVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGE 190          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.491e-36
Identity = 78/170 (45.88%), Postives = 102/170 (60.00%), Query Frame = 2
Query:  173 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGE 679
            +T+K+Y DV+   KP GRIV GLFGK  PKT  NFR +C   +GI  +     Y GS FHR+I  F++Q             SIYG+ F DE   ++H  PG L MAN GPDTNG QF++TTV   WL+G+H VFGKV+ GMD VY +E  +   +  P   V++ + GE
Sbjct:   24 VTSKIYMDVKHQKKPLGRIVFGLFGKRAPKTVTNFRHICL--RGINGTT----YVGSEFHRVISRFLIQGGDIVNNDGTGSTSIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFYVTTVAAQWLNGKHTVFGKVIEGMDTVYAIEDVKTDTDDHPIDPVIIVNCGE 187          
The following BLAST results are available for this feature:
BLAST of CB290406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
PPID_USTMA5.754e-3950.88Peptidyl-prolyl cis-trans isomerase D OS=Ustilago ... [more]
PPID_SCHPO5.754e-3953.3740 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
PPID_ASHGO1.282e-3851.50Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
PPIH_ASPFU2.855e-3849.40Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIH_ASPOR1.851e-3748.80Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
NKTR_MOUSE5.385e-3755.17NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]
NKTR_HUMAN5.385e-3755.17NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]
CYP8_CAEEL7.033e-3749.10Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
CYPR_DROME3.491e-3642.42Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
CYPR_CALVI3.491e-3645.88Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290406 ID=CB290406; Name=CB290406; organism=Citrus sinensis; type=EST; length=832bp
GCCGCAGTCTGCACTAAGCGGAACCCCAAAGTGAGCGTCTGCGAAACGAG
AAACAACGAAGTGATACATGGCTTCGACAAAATTTCTTCCACTCACGATG
CTATGGGCTATTGTCCTGTTGGCCACTTTCTCTTCAATTCAGGCGAAGAA
ATCGGATCAGAATTTGAAAGAAATCACAAACAAAGTTTACTTTGACGTTG
AGATTGCTGGAAAACCTGCCGGACGTATTGTAATGGGTCTCTTTGGAAAG
GCAGTCCCTAAAACTGCAGAAAATTTCCGAGCTTTGTGCACAGGGGAGAA
AGGGATTGGCAAGAGCGGGAAGCCACTCCACTACAAGGGAAGTACGTTCC
ATAGGATTATTCCCAGCTTTATGCTTCAAGGAGGTGATTTCACTCTTGGT
GATGGAAGAGGTGGAGAGTCAATTTATGGAGAGAAGTTCCCTGACGAAAA
TTTCAAACTGAAGCACACTGGCCCAGGGCTTTTGTCAATGGCAAATGCTG
GTCCAGACACCAATGGTTCACAATTCTTCATTACAACTGTGACAACTAGC
TGGTTGGATGGCAGGCATGTTGTATTTGGAAAGGTGCTATCGGGGATGGA
TGTAGTTTACAAGGTTGAAGCTGAAGGGAGGCAGAATGGCACTCCGAAGA
GCAAAGTCGTCGTTGCAGACAGCGGTGAACTTCCTCTGTGATTTCCCCCA
TAATTATATAATTACGCTATACACCTTTTTAGTCCTCTCGTCTTTTCAAC
CTTCATGAAGATACTCATAATTTGCCTATTTATCATGTAATAGACATTTT
AAAATGTCCTAGGTTGTTTGCCAAGCTGGTGC
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