CB290406

Overview
NameCB290406
Unique NameCB290406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:6..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIA_HUMAN (Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.108e-49
Identity = 97/165 (58.79%), Postives = 113/165 (68.48%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.108e-49
Identity = 97/166 (58.43%), Postives = 115/166 (69.28%), Query Frame = 2
Query:  182 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            +V+FD++  G+  GRIVM L    VPKTAENFRALCTGEKG G       YKGSTFHR+IP FM Q            +SIYGEKF DENF LKHT PG+LSMANAG +TNGSQFFI T  TSWLDG+HVVFG V  G+D++ KVE+ G  +G    K+ +AD G+
Sbjct:    5 QVFFDLQANGENLGRIVMELRADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQ 163          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIA_GORGO (Peptidyl-prolyl cis-trans isomerase A OS=Gorilla gorilla gorilla GN=PPIA PE=3 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 2.108e-49
Identity = 97/165 (58.79%), Postives = 113/165 (68.48%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIA_CERAE (Peptidyl-prolyl cis-trans isomerase A OS=Cercopithecus aethiops GN=PPIA PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.108e-49
Identity = 97/165 (58.79%), Postives = 113/165 (68.48%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.108e-49
Identity = 97/165 (58.79%), Postives = 113/165 (68.48%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.753e-49
Identity = 97/157 (61.78%), Postives = 111/157 (70.70%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK 655
            VY DV   G+P GR+V+ L    VPKTAENFRALCTGEKG G       YKGSTFHR+IPSFM Q            +SIYG +FPDENFKLKH GPG+LSMANAGP+TNGSQFFI T+ T WLDG+HVVFG V  GMDVV K+E+ G ++G    K
Sbjct:   49 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKK 198          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.133e-49
Identity = 100/166 (60.24%), Postives = 116/166 (69.88%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVVADSGE 679
            VYFD+E   KP GR+V+GL+GK VPKTAENFRAL TGEKG G       Y+GSTFHR+I  FM+Q            +SIYGEKF DENFK++HT  GLLSMANAG DTNGSQFFITTV T WLDGRHVVFG+VL G +VV  +E   +  G  P+  V +  SGE
Sbjct:   22 VYFDIEHGNKPLGRVVLGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKSGE 180          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 8.010e-49
Identity = 96/165 (58.18%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+   G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS+FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM +V  +E  G +NG    K+ ++D G+
Sbjct:    6 VFFDITADGEPLGRVCFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAMERFGSRNGKTSKKITISDCGQ 163          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 8.010e-49
Identity = 96/165 (58.18%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFG V  GM++V  +E  G +NG    K+ +AD G+
Sbjct:    6 VFFDIAVDGEPLGRVSFDLFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 8.010e-49
Identity = 96/165 (58.18%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+   G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS+FHRIIP FM Q             SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ ++D G+
Sbjct:    6 VFFDISADGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQ 163          
The following BLAST results are available for this feature:
BLAST of CB290406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
PPIA_HUMAN2.108e-4958.79Peptidyl-prolyl cis-trans isomerase A OS=Homo sapi... [more]
PPIA_HEMPU2.108e-4958.43Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPIA_GORGO2.108e-4958.79Peptidyl-prolyl cis-trans isomerase A OS=Gorilla g... [more]
PPIA_CERAE2.108e-4958.79Peptidyl-prolyl cis-trans isomerase A OS=Cercopith... [more]
PPIA_BOVIN2.108e-4958.79Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
PPIF_BOVIN2.753e-4961.78Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_ASPOR6.133e-4960.24Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIA_RAT8.010e-4958.18Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPIA_FELCA8.010e-4958.18Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
PPIA_CRIGR8.010e-4958.18Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bc07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290406 ID=CB290406; Name=CB290406; organism=Citrus sinensis; type=EST; length=832bp
GCCGCAGTCTGCACTAAGCGGAACCCCAAAGTGAGCGTCTGCGAAACGAG
AAACAACGAAGTGATACATGGCTTCGACAAAATTTCTTCCACTCACGATG
CTATGGGCTATTGTCCTGTTGGCCACTTTCTCTTCAATTCAGGCGAAGAA
ATCGGATCAGAATTTGAAAGAAATCACAAACAAAGTTTACTTTGACGTTG
AGATTGCTGGAAAACCTGCCGGACGTATTGTAATGGGTCTCTTTGGAAAG
GCAGTCCCTAAAACTGCAGAAAATTTCCGAGCTTTGTGCACAGGGGAGAA
AGGGATTGGCAAGAGCGGGAAGCCACTCCACTACAAGGGAAGTACGTTCC
ATAGGATTATTCCCAGCTTTATGCTTCAAGGAGGTGATTTCACTCTTGGT
GATGGAAGAGGTGGAGAGTCAATTTATGGAGAGAAGTTCCCTGACGAAAA
TTTCAAACTGAAGCACACTGGCCCAGGGCTTTTGTCAATGGCAAATGCTG
GTCCAGACACCAATGGTTCACAATTCTTCATTACAACTGTGACAACTAGC
TGGTTGGATGGCAGGCATGTTGTATTTGGAAAGGTGCTATCGGGGATGGA
TGTAGTTTACAAGGTTGAAGCTGAAGGGAGGCAGAATGGCACTCCGAAGA
GCAAAGTCGTCGTTGCAGACAGCGGTGAACTTCCTCTGTGATTTCCCCCA
TAATTATATAATTACGCTATACACCTTTTTAGTCCTCTCGTCTTTTCAAC
CTTCATGAAGATACTCATAATTTGCCTATTTATCATGTAATAGACATTTT
AAAATGTCCTAGGTTGTTTGCCAAGCTGGTGC
back to top