CB290406

Overview
NameCB290406
Unique NameCB290406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:6..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.010e-49
Identity = 97/172 (56.40%), Postives = 122/172 (70.93%), Query Frame = 2
Query:  170 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAE--GRQNGTPKSKVVVADSGE 679
            ++T+K++FD+EI G+ AGRIV+GLFG AVPKT ENF+ L TG KG G       Y+GS FHRIIP+FM+Q             SIYG KF DE+F LKH GPG+LSMANAGP+TNGSQFFI TV T WLD RHVVFG V+ G+DVV ++E++   + + +PK    +A SGE
Sbjct:   79 KVTSKIFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYG-------YQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGE 243          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.046e-48
Identity = 98/171 (57.31%), Postives = 119/171 (69.59%), Query Frame = 2
Query:  170 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKV-EAEGRQNGTPKSKVVVADSGE 679
            ++T+ VYFD++   +  GR+ +GLFGK VPKTAENFRAL TGEKG G       Y+GS FHR+IP+FM+Q            +SIYG +FPDENFKL H  PGLLSMANAGPD+NGSQFFITTV T WLDG HVVFG+VLSG D+V K+ +AE      P   V +  SG+
Sbjct:   24 KVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFG-------YEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLEDVKIIKSGQ 187          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.046e-48
Identity = 98/171 (57.31%), Postives = 121/171 (70.76%), Query Frame = 2
Query:  170 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGE 679
            +IT+KVYFD+    +P GR+VMGL+GK VP+T ENFRAL TGEKG G       Y+GS FHR+I +FM+Q            +SIYG++F DENFKLKHT  GLLSMANAG DTNGSQFFITTV TSWLDG+HVVFG+VL G +++ K+E ++      P   V +A SGE
Sbjct:   32 KITHKVYFDITQGDQPLGRVVMGLYGKTVPETTENFRALATGEKGFG-------YEGSAFHRVIKNFMIQGGDFTKGDGTGGKSIYGDRFKDENFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKIAKSGE 195          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.784e-48
Identity = 95/165 (57.58%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFG+V  GM +V  +E  G +NG    K+ +A+ G+
Sbjct:    6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQ 163          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.331e-48
Identity = 97/166 (58.43%), Postives = 114/166 (68.67%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVVADSGE 679
            V+FD+ I G+ AGR+   L+   VPKTAENFRALCTGEKG+G+SGKPL YKGS FHR+I  FM Q            ESIYGEKF DE F + H+ P LLSMANAGP+TNGSQFFIT   T  LDG+HVVFG+V+ G  VV  +E     NG  PK  VV+AD G+
Sbjct:    7 VFFDIAIGGQLAGRVAFRLYSDLVPKTAENFRALCTGEKGLGQSGKPLWYKGSAFHRVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQ 172          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.331e-48
Identity = 109/207 (52.66%), Postives = 133/207 (64.25%), Query Frame = 2
Query:   68 MASTKFLPLTMLWAIVL-LATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE--AEGRQNGTPKSKVVVADSGE 679
            M S K L L+    + L LA  ++     S+    +ITNKVYFD++   +  GRIV+GL+GK VP+TAENFRAL TGEKG G       Y+GS FHR+I  FM+Q            +SIYG KF DENFKL+HT  GLLSMANAG DTNGSQFFITT  T WLDG+HVVFG+VL G D+V K++   +GR N  P   V +  SGE
Sbjct:    1 MTSLKSLFLSFFLVVALGLALVNA-----SEPRGPKITNKVYFDIQHGDESLGRIVLGLYGKTVPETAENFRALATGEKGFG-------YEGSNFHRVIKDFMIQGGDFTRGDGTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNVPKGR-NDRPLKDVKIVKSGE 194          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.781e-48
Identity = 95/165 (57.58%), Postives = 111/165 (67.27%), Query Frame = 2
Query:  185 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            V+FD+    +P GR+   LF   VPKTAENFRAL TGEKG G       YKGS+FHRIIP FM Q             SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ ++D G+
Sbjct:    6 VFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQ 163          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.856e-48
Identity = 95/149 (63.76%), Postives = 108/149 (72.48%), Query Frame = 2
Query:  233 MGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            M LF   VP+TAENFRALCTGEKG+G   KPLHYKGS+FHR+IP FM Q            ESIYG KF DENF  KHTGPG+LSMANAGP TNGSQFFI T  T+WLDG+HVVFG+V+ GMDVV  +E  G Q+G  K  V +AD G+
Sbjct:    1 MELFQDVVPQTAENFRALCTGEKGMGDR-KPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQ 148          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 1.157e-47
Identity = 98/167 (58.68%), Postives = 114/167 (68.26%), Query Frame = 2
Query:  182 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            +V+FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKG G + GKPLH+KG  FHRII  FM+Q            ESIYGEKF DENF  KH   GLLSMANAGP+TNGSQFFITTV T  LDG+HVVFG+V+ G+ V   +E        P    V+A+ GE
Sbjct:   17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGE 183          
BLAST of CB290406 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 190.274 bits (482), Expect = 1.157e-47
Identity = 104/183 (56.83%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  134 SIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 679
            S QAK S+ +      +V+FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKGIG + GKPLH+KG  FHRII  FM+Q            ESIYGEKF DENF  KH   GLLSMANAG +TNGSQFFITTV T  LDG+HVVFG+V+ GM V   +E    +   P    V+A+ GE
Sbjct:    5 SPQAKPSNPS----NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGE 183          
The following BLAST results are available for this feature:
BLAST of CB290406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CYPB_VICFA8.010e-4956.40Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPIB_SCHPO1.046e-4857.31Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIB_GIBZE1.046e-4857.31Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
PPIA_RABIT1.784e-4857.58Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPID_AMAMU2.331e-4858.43Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPIB_EMENI2.331e-4852.66Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
PPIA_MOUSE6.781e-4857.58Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
CYPH_ALLCE8.856e-4863.76Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
PPID_MOUSE1.157e-4758.6840 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_BOVIN1.157e-4756.8340 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bc07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290406 ID=CB290406; Name=CB290406; organism=Citrus sinensis; type=EST; length=832bp
GCCGCAGTCTGCACTAAGCGGAACCCCAAAGTGAGCGTCTGCGAAACGAG
AAACAACGAAGTGATACATGGCTTCGACAAAATTTCTTCCACTCACGATG
CTATGGGCTATTGTCCTGTTGGCCACTTTCTCTTCAATTCAGGCGAAGAA
ATCGGATCAGAATTTGAAAGAAATCACAAACAAAGTTTACTTTGACGTTG
AGATTGCTGGAAAACCTGCCGGACGTATTGTAATGGGTCTCTTTGGAAAG
GCAGTCCCTAAAACTGCAGAAAATTTCCGAGCTTTGTGCACAGGGGAGAA
AGGGATTGGCAAGAGCGGGAAGCCACTCCACTACAAGGGAAGTACGTTCC
ATAGGATTATTCCCAGCTTTATGCTTCAAGGAGGTGATTTCACTCTTGGT
GATGGAAGAGGTGGAGAGTCAATTTATGGAGAGAAGTTCCCTGACGAAAA
TTTCAAACTGAAGCACACTGGCCCAGGGCTTTTGTCAATGGCAAATGCTG
GTCCAGACACCAATGGTTCACAATTCTTCATTACAACTGTGACAACTAGC
TGGTTGGATGGCAGGCATGTTGTATTTGGAAAGGTGCTATCGGGGATGGA
TGTAGTTTACAAGGTTGAAGCTGAAGGGAGGCAGAATGGCACTCCGAAGA
GCAAAGTCGTCGTTGCAGACAGCGGTGAACTTCCTCTGTGATTTCCCCCA
TAATTATATAATTACGCTATACACCTTTTTAGTCCTCTCGTCTTTTCAAC
CTTCATGAAGATACTCATAATTTGCCTATTTATCATGTAATAGACATTTT
AAAATGTCCTAGGTTGTTTGCCAAGCTGGTGC
back to top