CB290408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_CHLTA (Malate dehydrogenase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=mdh PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.780e-20 Identity = 56/162 (34.57%), Postives = 85/162 (52.47%), Query Frame = -3 Query: 288 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 761 +S + V +S V V++WGNHS+ Q PD A +N ++P+ E + D WL + +VQ RG+A+I+AR + R + EG W S GV SD Y +P LI+ FP CR GE+ ++ L D F R K+ ++ +E+ +EKA Sbjct: 168 LSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDHNPYGLPEDLIFGFP--CRMLATGEYEVIPRLPWDAFIRGKMQISLDEILQEKA 322
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.780e-20 Identity = 55/162 (33.95%), Postives = 89/162 (54.94%), Query Frame = -3 Query: 291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764 Q++ K V V N+ IWGNHS++Q PD +A ++ PV+ ++KD WL EF +Q+RG A+I+ D I+ V TPEG W S VY++G+ Y + L++S P CR +G++ +V+ + D++ R+++ + EEL EK Sbjct: 259 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIDGL----PVKTVIKDHKWLEEEFTVMIQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSSAVYTNGNPYGIAEDLVFSMP--CRSKGDGDYELVKDVVFDDYLRQRIKKSEEELLAEK 414
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1B_BRAFL (Putative malate dehydrogenase 1B OS=Branchiostoma floridae GN=MDH1B PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.855e-20 Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = -3 Query: 291 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 761 ++++L V + V +VI+WGN + Y DV+ A V+ G V E+V D+ WL GEF+ +Q R I + + + W G+PEG S+ V S+G YN+P G+++SFPV G W +VQ + ++E R L +L EEK Sbjct: 294 LAKRLTVNSAGVCDVIVWGNVGGTTYTDVSRARVHGYDGAIWGPPSYSCSVSEMVHDNKWLEGEFLEQLQSRSHTIQDSLQHSADLSMAAAISSTLSYWWNGSPEGQLFSLAVCSEGFYNIPEGVVFSFPVMFHKGSWEVVQDIDMNEDMRVMLSSITAQLVEEK 458
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_CHLAB (Malate dehydrogenase OS=Chlamydophila abortus GN=mdh PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19 Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = -3 Query: 288 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 761 ++ + V + +V +V+IWGNHS+ Q PD A ++ KP E++ D WL + ++Q RG+A+I+AR + R L +G W S GV SD Y +P LI+ FP CR +G++ IV GL D F + K+ ++ +E+S+EKA Sbjct: 171 LAHRAEVPLDEVSHVVIWGNHSAKQVPDFTQALIS----GKPAVEVIGDRDWLENIMLPSIQNRGSAVIEARGKSSAASAARALAEAARSIFL-PKDGEWFSTGVCSDYNPYGIPEDLIFGFP--CRMLPSGDYEIVPGLLWDTFIKNKIQISLDEISQEKA 325
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19 Identity = 56/162 (34.57%), Postives = 86/162 (53.09%), Query Frame = -3 Query: 288 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 761 ++ + V +S V V++WGNHS+ Q PD A ++ +P+ E + D WL + +VQ RG+A+I+AR + R + EG W S GV SD + Y +P +I+ FP CR GE+ IV GL D F R K+ ++ +E+ +EKA Sbjct: 168 LAHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIH----GRPIVETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDNNPYGLPEDIIFGFP--CRMLGTGEYEIVPGLPWDAFIRGKMQISLDEILQEKA 322
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_CHLPN (Malate dehydrogenase OS=Chlamydia pneumoniae GN=mdh PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.181e-18 Identity = 53/162 (32.72%), Postives = 85/162 (52.47%), Query Frame = -3 Query: 288 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 761 ++ + V + +V V+IWGNHS+ Q PD A ++ KP E++ D WL + +VQ RG+A+I+AR + R + W S GV SD Y +P LI+ FP CR +G++ I+ GL + F R K+ ++ +E+++EKA Sbjct: 169 LAHRAEVPLEEVSRVVIWGNHSAKQVPDFTQARIS----GKPAAEVIGDRDWLENILVHSVQNRGSAVIEARGKSSAASASRALAEAARS-IFCPKSDEWFSSGVCSDHNPYGIPEDLIFGFP--CRMLPSGDYEIIPGLPWEPFIRNKIQISLDEIAQEKA 323
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1B_BOVIN (Putative malate dehydrogenase 1B OS=Bos taurus GN=MDH1B PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.666e-16 Identity = 47/165 (28.48%), Postives = 81/165 (49.09%), Query Frame = -3 Query: 291 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 761 ++ KL + S +K+VIIWGN S + Y D+ A V +PV L+ D W+N EF+ +++ + + ++ W G+P G VS+GV S+G + +P G+++S PV NG W ++ L E S++ + A +L +E+ Sbjct: 294 LARKLKITPSCIKDVIIWGNISGNNYVDLRKAKVYRYESAIWGPPHYSRPVLSLLFDREWVNREFVVSLK----TLTATGRQFGGMLAAHSIATTLKYWCHGSPPGEIVSLGVLSEGQFGIPKGIVFSMPVKFENGTWVVLTDLKNTEISQQVMTRMANDLIQEQ 454
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1B_DANRE (Putative malate dehydrogenase 1B OS=Danio rerio GN=mdh1b PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15 Identity = 48/166 (28.92%), Postives = 81/166 (48.80%), Query Frame = -3 Query: 291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764 Q+++KL+V+ SD+ NVI+WGN S S + D+ A V G + V E++ D WL +F + + + A I ++ W S+GV S G + +PAGL++S PV+ +G W++ +++ + R LD A+EL E+ Sbjct: 271 QLAQKLSVKTSDITNVIVWGNISGSFHIDLQRAKVFRYDGAIRGPDGFSQHVMEMIYDWKWLKTDFRSLLHKHRATISSKTNKATAISTTNAILAILKAWNNAESPEEVFSLGVLSTGQFGIPAGLVFSMPVSFTDGHWSVRSDVTVTDELRVNLDACADELRMER 436
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1B_MOUSE (Putative malate dehydrogenase 1B OS=Mus musculus GN=Mdh1b PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.577e-15 Identity = 47/165 (28.48%), Postives = 79/165 (47.88%), Query Frame = -3 Query: 291 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV---NTAAGEKP-----VRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 761 ++ K+ +++K+VIIWGN + + Y D+ A V +A P V L+ D W+ EF+ T++ + K ++ W G+P G VS+GV S+G +++P G+++S PV NG W ++ L S K L +L +EK Sbjct: 294 LARKMKTTSANIKDVIIWGNITGNNYVDLRKAKVYNYESAVKGPPGHYHSVLSLIFDREWITKEFVQTLK----ILSSTGKQFGGILAAHSIATTLKYWYHGSPPGEIVSLGVMSEGQFDIPEGIVFSMPVKFENGTWVVLTDLEDISLSEKTLSRLTGDLIQEK 454
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1B_HUMAN (Putative malate dehydrogenase 1B OS=Homo sapiens GN=MDH1B PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.120e-14 Identity = 48/171 (28.07%), Postives = 78/171 (45.61%), Query Frame = -3 Query: 291 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFI------TTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 761 ++ KL S +K+VIIWGN S + Y D+ V +PV L+ D W+ EF+ TT ++ I+ A ++ W G+P G VS+G+ S+G + +P G+++S PV NG W ++ L E S + + +L +EK Sbjct: 294 LARKLKTAPSYIKDVIIWGNISGNNYVDLRKTRVYRYESAIWGPLHYSRPVLNLIFDSEWVKREFVAILKNLTTTGRQFGGILAAHSIATT----------LKYWYHGSPPGEIVSLGILSEGQFGIPKGIVFSMPVKFENGTWVVLTDLKDVEISEQIMTRMTSDLIQEK 454 The following BLAST results are available for this feature:
BLAST of CB290408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 190
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290408 ID=CB290408; Name=CB290408; organism=Citrus sinensis; type=EST; length=766bpback to top |