CB290408

Overview
NameCB290408
Unique NameCB290408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:655..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_CHLTA (Malate dehydrogenase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.780e-20
Identity = 56/162 (34.57%), Postives = 85/162 (52.47%), Query Frame = -3
Query:  288 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 761
            +S +  V +S V  V++WGNHS+ Q PD   A +N    ++P+ E + D  WL    + +VQ RG+A+I+AR             +  R  +    EG W S GV SD   Y +P  LI+ FP  CR    GE+ ++  L  D F R K+ ++ +E+ +EKA
Sbjct:  168 LSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIN----DRPIAETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDHNPYGLPEDLIFGFP--CRMLATGEYEVIPRLPWDAFIRGKMQISLDEILQEKA 322          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.780e-20
Identity = 55/162 (33.95%), Postives = 89/162 (54.94%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q++ K  V    V N+ IWGNHS++Q PD  +A ++      PV+ ++KD  WL  EF   +Q+RG A+I+               D I+  V  TPEG W S  VY++G+ Y +   L++S P  CR   +G++ +V+ +  D++ R+++  + EEL  EK
Sbjct:  259 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIDGL----PVKTVIKDHKWLEEEFTVMIQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSSAVYTNGNPYGIAEDLVFSMP--CRSKGDGDYELVKDVVFDDYLRQRIKKSEEELLAEK 414          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1B_BRAFL (Putative malate dehydrogenase 1B OS=Branchiostoma floridae GN=MDH1B PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.855e-20
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = -3
Query:  291 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 761
            ++++L V  + V +VI+WGN   + Y DV+ A V+   G           V E+V D+ WL GEF+  +Q R   I  + +              +  W  G+PEG   S+ V S+G YN+P G+++SFPV    G W +VQ + ++E  R  L     +L EEK
Sbjct:  294 LAKRLTVNSAGVCDVIVWGNVGGTTYTDVSRARVHGYDGAIWGPPSYSCSVSEMVHDNKWLEGEFLEQLQSRSHTIQDSLQHSADLSMAAAISSTLSYWWNGSPEGQLFSLAVCSEGFYNIPEGVVFSFPVMFHKGSWEVVQDIDMNEDMRVMLSSITAQLVEEK 458          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_CHLAB (Malate dehydrogenase OS=Chlamydophila abortus GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = -3
Query:  288 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 761
            ++ +  V + +V +V+IWGNHS+ Q PD   A ++     KP  E++ D  WL    + ++Q RG+A+I+AR             +  R   L   +G W S GV SD   Y +P  LI+ FP  CR   +G++ IV GL  D F + K+ ++ +E+S+EKA
Sbjct:  171 LAHRAEVPLDEVSHVVIWGNHSAKQVPDFTQALIS----GKPAVEVIGDRDWLENIMLPSIQNRGSAVIEARGKSSAASAARALAEAARSIFL-PKDGEWFSTGVCSDYNPYGIPEDLIFGFP--CRMLPSGDYEIVPGLLWDTFIKNKIQISLDEISQEKA 325          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 56/162 (34.57%), Postives = 86/162 (53.09%), Query Frame = -3
Query:  288 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 761
            ++ +  V +S V  V++WGNHS+ Q PD   A ++     +P+ E + D  WL    + +VQ RG+A+I+AR             +  R  +    EG W S GV SD + Y +P  +I+ FP  CR    GE+ IV GL  D F R K+ ++ +E+ +EKA
Sbjct:  168 LAHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIH----GRPIVETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDNNPYGLPEDIIFGFP--CRMLGTGEYEIVPGLPWDAFIRGKMQISLDEILQEKA 322          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_CHLPN (Malate dehydrogenase OS=Chlamydia pneumoniae GN=mdh PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.181e-18
Identity = 53/162 (32.72%), Postives = 85/162 (52.47%), Query Frame = -3
Query:  288 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 761
            ++ +  V + +V  V+IWGNHS+ Q PD   A ++     KP  E++ D  WL    + +VQ RG+A+I+AR             +  R  +       W S GV SD   Y +P  LI+ FP  CR   +G++ I+ GL  + F R K+ ++ +E+++EKA
Sbjct:  169 LAHRAEVPLEEVSRVVIWGNHSAKQVPDFTQARIS----GKPAAEVIGDRDWLENILVHSVQNRGSAVIEARGKSSAASASRALAEAARS-IFCPKSDEWFSSGVCSDHNPYGIPEDLIFGFP--CRMLPSGDYEIIPGLPWEPFIRNKIQISLDEIAQEKA 323          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1B_BOVIN (Putative malate dehydrogenase 1B OS=Bos taurus GN=MDH1B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.666e-16
Identity = 47/165 (28.48%), Postives = 81/165 (49.09%), Query Frame = -3
Query:  291 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 761
            ++ KL +  S +K+VIIWGN S + Y D+  A V              +PV  L+ D  W+N EF+ +++     +    +              ++ W  G+P G  VS+GV S+G + +P G+++S PV   NG W ++  L   E S++ +   A +L +E+
Sbjct:  294 LARKLKITPSCIKDVIIWGNISGNNYVDLRKAKVYRYESAIWGPPHYSRPVLSLLFDREWVNREFVVSLK----TLTATGRQFGGMLAAHSIATTLKYWCHGSPPGEIVSLGVLSEGQFGIPKGIVFSMPVKFENGTWVVLTDLKNTEISQQVMTRMANDLIQEQ 454          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1B_DANRE (Putative malate dehydrogenase 1B OS=Danio rerio GN=mdh1b PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15
Identity = 48/166 (28.92%), Postives = 81/166 (48.80%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q+++KL+V+ SD+ NVI+WGN S S + D+  A V    G         + V E++ D  WL  +F + + +  A I                   ++ W          S+GV S G + +PAGL++S PV+  +G W++   +++ +  R  LD  A+EL  E+
Sbjct:  271 QLAQKLSVKTSDITNVIVWGNISGSFHIDLQRAKVFRYDGAIRGPDGFSQHVMEMIYDWKWLKTDFRSLLHKHRATISSKTNKATAISTTNAILAILKAWNNAESPEEVFSLGVLSTGQFGIPAGLVFSMPVSFTDGHWSVRSDVTVTDELRVNLDACADELRMER 436          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1B_MOUSE (Putative malate dehydrogenase 1B OS=Mus musculus GN=Mdh1b PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.577e-15
Identity = 47/165 (28.48%), Postives = 79/165 (47.88%), Query Frame = -3
Query:  291 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV---NTAAGEKP-----VRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 761
            ++ K+    +++K+VIIWGN + + Y D+  A V    +A    P     V  L+ D  W+  EF+ T++     +    K              ++ W  G+P G  VS+GV S+G +++P G+++S PV   NG W ++  L     S K L     +L +EK
Sbjct:  294 LARKMKTTSANIKDVIIWGNITGNNYVDLRKAKVYNYESAVKGPPGHYHSVLSLIFDREWITKEFVQTLK----ILSSTGKQFGGILAAHSIATTLKYWYHGSPPGEIVSLGVMSEGQFDIPEGIVFSMPVKFENGTWVVLTDLEDISLSEKTLSRLTGDLIQEK 454          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1B_HUMAN (Putative malate dehydrogenase 1B OS=Homo sapiens GN=MDH1B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.120e-14
Identity = 48/171 (28.07%), Postives = 78/171 (45.61%), Query Frame = -3
Query:  291 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFI------TTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 761
            ++ KL    S +K+VIIWGN S + Y D+    V              +PV  L+ D  W+  EF+      TT  ++   I+ A                ++ W  G+P G  VS+G+ S+G + +P G+++S PV   NG W ++  L   E S + +     +L +EK
Sbjct:  294 LARKLKTAPSYIKDVIIWGNISGNNYVDLRKTRVYRYESAIWGPLHYSRPVLNLIFDSEWVKREFVAILKNLTTTGRQFGGILAAHSIATT----------LKYWYHGSPPGEIVSLGILSEGQFGIPKGIVFSMPVKFENGTWVVLTDLKDVEISEQIMTRMTSDLIQEK 454          
The following BLAST results are available for this feature:
BLAST of CB290408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
MDH_CHLTA6.780e-2034.57Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]
MDHP_MESCR6.780e-2033.95Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDH1B_BRAFL8.855e-2032.73Putative malate dehydrogenase 1B OS=Branchiostoma ... [more]
MDH_CHLAB1.156e-1934.57Malate dehydrogenase OS=Chlamydophila abortus GN=m... [more]
MDH_CHLMU1.973e-1934.57Malate dehydrogenase OS=Chlamydia muridarum GN=mdh... [more]
MDH_CHLPN2.181e-1832.72Malate dehydrogenase OS=Chlamydia pneumoniae GN=md... [more]
MDH1B_BOVIN2.666e-1628.48Putative malate dehydrogenase 1B OS=Bos taurus GN=... [more]
MDH1B_DANRE2.257e-1528.92Putative malate dehydrogenase 1B OS=Danio rerio GN... [more]
MDH1B_MOUSE8.577e-1528.48Putative malate dehydrogenase 1B OS=Mus musculus G... [more]
MDH1B_HUMAN1.120e-1428.07Putative malate dehydrogenase 1B OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290408 ID=CB290408; Name=CB290408; organism=Citrus sinensis; type=EST; length=766bp
GTTAAAACAAAAAAAAAATTGTTATTGATAGTTTGATACATAAATCACAA
TGGGCCTTTAATATCCATTTATCCAGGAAAAGTAACAAAACTCCAAAATC
CCGATATTCAAATGCAGAAATAGCAACATAAGATGGAAAGGCTTCTCCAT
CATCAATGGTTCCTCCAGGTTTCAACAATGGTTTTATTCGAAACTGTAAC
TATACCAACTACTCAGACAAAGCTAAGGGCCTTGGTAACACACTATTGAA
GGGAAGAAAGCATTTAAGAGAGACATGAGTATGCGAGGGCCTTCTCCTCG
GAGAGCTCCTCTGCTGTCAAGTCCAACTTCTTCCTTGAGAATTCATCAAT
GCTGAGTCCTTGAACAATTGTCCATTCACCGTTGCGGCAGGTTACTGGGA
ATGAGTAAATGAGCCCAGCTGGTACATTGTATGAACCATCAGAGTATACC
CCCATGGAGACCCAGGTGCCCTCAGGAGTTCCAAGAACCCAATCACGGAT
ATGGTCACAAGCAGAGCTAGCAGCAGACAGAGCACTCGAGAGCTTTCTGG
CTTTGATGATTGCAGCACCACGTTGTTGGACTGTGGTTATGAATTCTCCA
TTCAACCATGCATCATCCTTGACAAGCTCACGGACAGGCTTTTCCCCAGC
TGCAGTATTGACAGTTGCATGGTTGACATCAGGGTACTGAGATGATGAAT
GATTTCCCCAAATAATCACATTCTTAACATCAGATACTTGGACATTCAGT
TTCTCAGATATTTGTC
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