CB290408

Overview
NameCB290408
Unique NameCB290408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 75/157 (47.77%), Postives = 105/157 (66.88%), Query Frame = -3 
Query:  294 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 764
            Q+++K    V  ++ + +WGNHSS+ +PD+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR           A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  166 QLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317
[Close]
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 75/157 (47.77%), Postives = 105/157 (66.88%), Query Frame = -3 
Query:  294 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 764
            Q+++K    V  ++ + +WGNHSS+ +PD+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR           A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  166 QLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317
[Close]
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 75/157 (47.77%), Postives = 105/157 (66.88%), Query Frame = -3 
Query:  294 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 764
            Q+++K    V  ++ + +WGNHSS+ +PD+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR           A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  166 QLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317
[Close]
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = -3 
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q++      V D+  V IWGNHSS+QYPD+ HA V    G++   ++  D  WL G+FI TV  RG+AII+AR           A DH+ DWVLGTPEG W S+ + S G+Y VP GL+ SFPV   +G W +V+GL ID+FSRK++D +  +L  E+
Sbjct:  169 QLARHSGAAVRDISRVTIWGNHSSTQYPDIFHARV----GDRSGADIAADREWLTGDFIPTVANRGSAIIEARGTSSAASAANAAIDHVHDWVLGTPEGDWTSVALPSTGAYGVPEGLVSSFPVRSVDGAWQVVEGLEIDDFSRKRIDASVADLESER 322
[Close]
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = -3 
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q++ K    V+ ++ +I+WGNHS + YPD   ATV+     +P+ +L+ D+AW    FI TV +RGAAII+AR           A DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPVT  NGE+T+V+ L +D FSR+++D T +EL EE+
Sbjct:  169 QLAGKSGKAVAGIEKLIVWGNHSPTMYPDYRFATVDG----QPLAKLINDEAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVTTANGEYTMVKDLEVDAFSRERMDFTLKELLEER 321
[Close]
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_ACIBY (Malate dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = -3 
Query:  288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764
            Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR           A DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  168 QVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321
[Close]
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_ACIBT (Malate dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=mdh PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = -3 
Query:  288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764
            Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR           A DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  168 QVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321
[Close]
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_ACIBC (Malate dehydrogenase OS=Acinetobacter baumannii (strain ACICU) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = -3 
Query:  288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764
            Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR           A DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  168 QVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321
[Close]
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_ACIB5 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = -3 
Query:  288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764
            Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR           A DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  168 QVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321
[Close]
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_ACIB3 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=mdh PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = -3 
Query:  288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764
            Q+++K  V V+D++ + +WGNHS + Y D   AT N   GE  +++ + D AW    F+ TV +RGAAII+AR           A DH+RDW LGT  G WV+MGV SDGSY +P G+++ FPVT  NGE+ IVQGL IDEFSR++++ T  EL EE+A
Sbjct:  168 QVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN---GES-LKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321
The following BLAST results are available for this feature:
BLAST of CB290408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
MDH_THETH1.360e-3647.77Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET81.360e-3647.77Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET21.360e-3647.77Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_RHOOB1.360e-3646.20Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_BORA11.360e-3647.47Malate dehydrogenase OS=Bordetella avium (strain 1... [more]
MDH_ACIBY1.360e-3648.43Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBT1.360e-3648.43Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBC1.360e-3648.43Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB51.360e-3648.43Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB31.360e-3648.43Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290408 ID=CB290408; Name=CB290408; organism=Citrus sinensis; type=EST; length=766bp
GTTAAAACAAAAAAAAAATTGTTATTGATAGTTTGATACATAAATCACAA
TGGGCCTTTAATATCCATTTATCCAGGAAAAGTAACAAAACTCCAAAATC
CCGATATTCAAATGCAGAAATAGCAACATAAGATGGAAAGGCTTCTCCAT
CATCAATGGTTCCTCCAGGTTTCAACAATGGTTTTATTCGAAACTGTAAC
TATACCAACTACTCAGACAAAGCTAAGGGCCTTGGTAACACACTATTGAA
GGGAAGAAAGCATTTAAGAGAGACATGAGTATGCGAGGGCCTTCTCCTCG
GAGAGCTCCTCTGCTGTCAAGTCCAACTTCTTCCTTGAGAATTCATCAAT
GCTGAGTCCTTGAACAATTGTCCATTCACCGTTGCGGCAGGTTACTGGGA
ATGAGTAAATGAGCCCAGCTGGTACATTGTATGAACCATCAGAGTATACC
CCCATGGAGACCCAGGTGCCCTCAGGAGTTCCAAGAACCCAATCACGGAT
ATGGTCACAAGCAGAGCTAGCAGCAGACAGAGCACTCGAGAGCTTTCTGG
CTTTGATGATTGCAGCACCACGTTGTTGGACTGTGGTTATGAATTCTCCA
TTCAACCATGCATCATCCTTGACAAGCTCACGGACAGGCTTTTCCCCAGC
TGCAGTATTGACAGTTGCATGGTTGACATCAGGGTACTGAGATGATGAAT
GATTTCCCCAAATAATCACATTCTTAACATCAGATACTTGGACATTCAGT
TTCTCAGATATTTGTC
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