CB290408

Overview
NameCB290408
Unique NameCB290408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:655..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_XYLF2 (Malate dehydrogenase OS=Xylella fastidiosa (strain M23) GN=mdh PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.964e-35
Identity = 76/159 (47.80%), Postives = 102/159 (64.15%), Query Frame = -3
Query:  288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764
            Q+S KL   V++++ +I+WGNHS + YPD   AT    A   P+ E + D AW    FI TV +RGAAII+AR           A DH+RDW+LG+  G W++MGV SDGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  168 QLSTKLGKPVANIEKLIVWGNHSPTMYPDYRFAT----ADGTPIIEAINDQAWNANSFIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.964e-35
Identity = 75/159 (47.17%), Postives = 101/159 (63.52%), Query Frame = -3
Query:  288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764
            QI+ K    V+ ++ + +WGNHS + Y D   AT++  +    V+ ++ DD W    F+ TV +RGAAII+AR           A DHIRDWVLGT  G WV+MGV SDGSY +P G++Y  PV C NGE+  V+GL ID FSR+++DLT  EL EE+A
Sbjct:  166 QIAAKTGKPVASIEKLAVWGNHSPTMYADYRFATIDGQS----VKAMINDDVWNRDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-NGKWVTMGVPSDGSYGIPEGVMYGVPVVCENGEYKRVEGLEIDAFSRERMDLTLAELEEERA 319          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.564e-35
Identity = 75/158 (47.47%), Postives = 102/158 (64.56%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QI+ K++  V+ ++ + +WGNHS + YPD   AT    A  K V+E + D+ W    F+ TV +RGAAII AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P   I+ FPVT  NGE+ IVQGL ID FS+++++LT +EL EE+
Sbjct:  169 QIAAKISKPVTSIEKLTVWGNHSPTMYPDYRFAT----ADGKSVKEAINDEVWNKDVFLPTVGKRGAAIIDARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTIFGFPVTVENGEYKIVQGLEIDAFSQERINLTLKELLEER 321          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_HERAR (Malate dehydrogenase OS=Herminiimonas arsenicoxydans GN=mdh PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.564e-35
Identity = 74/158 (46.84%), Postives = 103/158 (65.19%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QI+ K    V+ ++ + +WGNHS + YPD   AT++     K V+E + D+ W    F+ TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P   ++ FPVT  NGE+ IVQGL ID FS+++++LT +ELSEE+
Sbjct:  169 QIAAKTGKPVTAIEKLTVWGNHSPTMYPDYRFATIDG----KSVKEAINDEVWNKDVFLPTVGKRGAAIIEARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTMFGFPVTTENGEYKIVQGLEIDAFSQERINLTLKELSEER 321          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC_ECHGR (Malate dehydrogenase, cytoplasmic OS=Echinococcus granulosus GN=MDH PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.564e-35
Identity = 72/159 (45.28%), Postives = 99/159 (62.26%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q++ K  V  + VKNV IWGNHS+ Q+PD++HA V     + P +EL+ D+ W+   FI  VQ RGAA+I  RK            D +RDW  GT EG WVSM VYS G  Y  P  + +SFPVT ++G + +V GLS+DE+SR   +L+A+EL +E+
Sbjct:  166 QVAAKAGVPNTCVKNVCIWGNHSNKQFPDLSHAVVTKDGKQHPAKELINDEKWVKEVFIPCVQNRGAAVIGLRKLSRAASAAKAIVDQMRDWWFGTKEGEWVSMSVYSTGDHYGAPKDIYFSFPVTIKDGHYKVVDGLSMDEWSRSLFNLSADELVDER 324          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH1_BURTA (Malate dehydrogenase 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.564e-35
Identity = 78/158 (49.37%), Postives = 101/158 (63.92%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q++ K    V+ ++ + +WGNHS + YPD   AT   A GE  ++ L+ DDAW    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  167 QLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFAT---AEGESLLK-LINDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_BURM1 (Malate dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=mdh PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.349e-35
Identity = 77/158 (48.73%), Postives = 100/158 (63.29%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q++ K    V+ ++ + +WGNHS + YPD   AT   A GE  ++ L+ DD W    FI TV +RGAAII+AR           A DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  167 QLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFAT---AEGESLLK-LINDDEWNRNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDATLAELLEER 319          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 3.349e-35
Identity = 74/158 (46.84%), Postives = 103/158 (65.19%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QI+ K    VS ++ + +WGNHS + Y D  +A ++ A+    V++++ DDAW    F+ TV +RGAAII AR           A DHI DWVLGT  G W +MG+ SDGSY +P G+I+ FPVT  NGE+ IVQGLSID FS++++++T  EL EE+
Sbjct:  169 QIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGAS----VKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQ 321          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_XYLFA (Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.374e-35
Identity = 75/159 (47.17%), Postives = 102/159 (64.15%), Query Frame = -3
Query:  288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764
            Q+S KL+  V++++ +I+WGNHS + YPD   AT    A   P+ E + D AW    FI TV +RGAAII+ R           A DH+RDW+LG+  G W++MGV SDGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  168 QLSTKLSKPVANIEKLIVWGNHSPTMYPDYRFAT----ADGTPIIEAINDQAWNANSFIPTVSKRGAAIIEVRGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDH_DECAR (Malate dehydrogenase OS=Dechloromonas aromatica (strain RCB) GN=mdh PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.374e-35
Identity = 73/157 (46.50%), Postives = 104/157 (66.24%), Query Frame = -3
Query:  294 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 764
            Q++ K    VS +K +++WGNHS + Y D    T N  +    V+ LV D AW N  F+ TV +RGAAII+AR           A DH+RDWVLG+ E  WV+MGV SDGSY +PAG+++ FP  C+ G+++I+QGL IDE+SR+K++ T +EL++E
Sbjct:  170 QLAGKTGRAVSSLKKLVVWGNHSPTMYADYRFCTSNGDS----VKALVNDHAWNNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGSDE--WVTMGVPSDGSYGIPAGIVFGFPCECKGGKFSIIQGLEIDEYSREKINFTLKELTDE 320          
The following BLAST results are available for this feature:
BLAST of CB290408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
MDH_XYLF21.964e-3547.80Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_CHRVO1.964e-3547.17Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDH_JANMA2.564e-3547.47Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_HERAR2.564e-3546.84Malate dehydrogenase OS=Herminiimonas arsenicoxyda... [more]
MDHC_ECHGR2.564e-3545.28Malate dehydrogenase, cytoplasmic OS=Echinococcus ... [more]
MDH1_BURTA2.564e-3549.37Malate dehydrogenase 1 OS=Burkholderia thailandens... [more]
MDH_BURM13.349e-3548.73Malate dehydrogenase OS=Burkholderia multivorans (... [more]
MDH_AQUAR3.349e-3546.84Malate dehydrogenase OS=Aquaspirillum arcticum GN=... [more]
MDH_XYLFA4.374e-3547.17Malate dehydrogenase OS=Xylella fastidiosa GN=mdh ... [more]
MDH_DECAR4.374e-3546.50Malate dehydrogenase OS=Dechloromonas aromatica (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290408 ID=CB290408; Name=CB290408; organism=Citrus sinensis; type=EST; length=766bp
GTTAAAACAAAAAAAAAATTGTTATTGATAGTTTGATACATAAATCACAA
TGGGCCTTTAATATCCATTTATCCAGGAAAAGTAACAAAACTCCAAAATC
CCGATATTCAAATGCAGAAATAGCAACATAAGATGGAAAGGCTTCTCCAT
CATCAATGGTTCCTCCAGGTTTCAACAATGGTTTTATTCGAAACTGTAAC
TATACCAACTACTCAGACAAAGCTAAGGGCCTTGGTAACACACTATTGAA
GGGAAGAAAGCATTTAAGAGAGACATGAGTATGCGAGGGCCTTCTCCTCG
GAGAGCTCCTCTGCTGTCAAGTCCAACTTCTTCCTTGAGAATTCATCAAT
GCTGAGTCCTTGAACAATTGTCCATTCACCGTTGCGGCAGGTTACTGGGA
ATGAGTAAATGAGCCCAGCTGGTACATTGTATGAACCATCAGAGTATACC
CCCATGGAGACCCAGGTGCCCTCAGGAGTTCCAAGAACCCAATCACGGAT
ATGGTCACAAGCAGAGCTAGCAGCAGACAGAGCACTCGAGAGCTTTCTGG
CTTTGATGATTGCAGCACCACGTTGTTGGACTGTGGTTATGAATTCTCCA
TTCAACCATGCATCATCCTTGACAAGCTCACGGACAGGCTTTTCCCCAGC
TGCAGTATTGACAGTTGCATGGTTGACATCAGGGTACTGAGATGATGAAT
GATTTCCCCAAATAATCACATTCTTAACATCAGATACTTGGACATTCAGT
TTCTCAGATATTTGTC
back to top