CB290411

Overview
NameCB290411
Unique NameCB290411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:91..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 8.742e-31
Identity = 69/101 (68.32%), Postives = 78/101 (77.23%), Query Frame = -1
Query:  282 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWKTQ 584
            VP VDVS V L VR+EK A Y++IK AIK  SEG LKG +GY E+D+VS  F+G SRSS FDAKAGIAL+  FVKLVSWYD EWGYS RV DLI  M+KTQ
Sbjct:  237 VPTVDVSVVDLTVRIEKGASYEDIKKAIKAASEGPLKGIMGYVEEDLVSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.142e-30
Identity = 71/94 (75.53%), Postives = 73/94 (77.66%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L  RLEK A YDEIKAAIK ESE  LKG LGY EDDVVS  FVG SRSS FDAKAGIAL+  FVK+VSWYD EWGYS RV DLI
Sbjct:  236 VPTVDVSVVDLTARLEKAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLI 329          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 70/101 (69.31%), Postives = 77/101 (76.24%), Query Frame = -1
Query:  282 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWKTQ 584
            VP VDVS V L VRL K A Y++IKAAIK ESEG LKG LGY ++D+VS  F G SRSS FDAKAGIAL+  FVKLVSWYD EWGYSTRV DLI  M  T+
Sbjct:  205 VPTVDVSVVDLTVRLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.322e-30
Identity = 70/99 (70.71%), Postives = 74/99 (74.75%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  DVS V L VRLEK A YD IK AIK  SEG++KG LGY EDDVVS  F+  SRSS FDAKAGIALS  FVKLV+WYD EWGYS RV DLIV M K
Sbjct:  239 VPTTDVSVVDLTVRLEKPASYDAIKTAIKEASEGQMKGILGYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDLIVHMAK 337          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.182e-29
Identity = 66/99 (66.67%), Postives = 76/99 (76.77%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  DVS V L VRLEK A Y++IKAAIK  SEG LKG LGY ED+VVS  F+G S SS FDAKAGI+L+  FVKL+SWYD E+GYSTRV DL+V + K
Sbjct:  233 VPNPDVSVVDLTVRLEKSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.182e-29
Identity = 66/94 (70.21%), Postives = 72/94 (76.60%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L V+L K+  YDEIKAAIK  SEGKLKG LGY ED VVS  F+G + SS FDA AGI LS KFVKLVSWYD E+GYSTRV DL+
Sbjct:  232 VPTVDVSVVDLTVKLNKETTYDEIKAAIKAASEGKLKGILGYTEDAVVSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLV 325          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.396e-28
Identity = 66/94 (70.21%), Postives = 72/94 (76.60%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L V+L+K+  YDEIK  IK  SEGKLKG LGY ED VVS  F+G SRSS FDA AGI LS KFVKLVSWYD E+GYSTRV DL+
Sbjct:  233 VPTVDVSVVDLTVKLQKETTYDEIKKVIKQASEGKLKGVLGYTEDAVVSSDFLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLV 326          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.109e-28
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  DVS V L VRL K+  YD+IKAA+K  SEG L+GFLGY EDDVVS  F+G +RSS FDAKAGI LSK FVK+VSWYD E+GYS RV DL+  M K
Sbjct:  231 VPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQK 329          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.927e-28
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = -1
Query:  300 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIV 584
            VP +DVS V L VRLEK+A YDEI A +K  SEG LKG LG+ ++ VVS  F GA+ SS FD+KAGIA+SK FVKL++WYD EWGYS RV DL+V
Sbjct:  234 VPTLDVSVVDLVVRLEKEASYDEIVATVKEASEGPLKGILGFTDESVVSTDFTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLV 328          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.927e-28
Identity = 63/95 (66.32%), Postives = 71/95 (74.74%), Query Frame = -1
Query:  300 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIV 584
            VP  +VS V L VR+EK A YDEIK A+K  SEG L G LGY EDD+VS    G +RSS FDAKAGI+L+K FVKLVSWYD EWGYS RV DL+V
Sbjct:  234 VPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGSLNGILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLV 328          
The following BLAST results are available for this feature:
BLAST of CB290411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
G3PC_MAIZE8.742e-3168.32Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR1.142e-3075.53Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU2.544e-3069.31Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA3.322e-3070.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI8.182e-2966.67Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_ASHGO8.182e-2970.21Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P2_CANGA1.396e-2870.21Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_HOMAM3.109e-2866.67Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_SCHCO6.927e-2864.21Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_COCHE6.927e-2866.32Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290411 ID=CB290411; Name=CB290411; organism=Citrus sinensis; type=EST; length=584bp
TTTTTTTTTTTTTTTTTCTTATAAAAGCAAGTTTCCAATAAACAATTGGT
TTTCTCCCCAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTA
CAAGGGAAAATCTAAGCCCAACCCTGCATGAACAGGGAAGGCTCTGGATA
ATGTCTTGGAAACAATTTTATTTAAACTCAAACCCTCTACATAAAAACAC
AAACACCACATTTAGCACAAAAAAACCCCCCACTTACCACAACTAAGCGG
GTTACATACTCAAGCCCCCCCGAGTAAGTTACTGGGTCTTCCACATGGGG
ACAATCAAATCCCCCACACGAGTACTGTACCCCCACTCCTTGTCATACCA
TGAAACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCAT
CAAAAAAACTTGACCTACTGGCACCAACAAAGGCGGGGGATACCACATCA
TCCTCAGGGTATCCCAAAAAACCCTTTAGTTTCCCCTCTGACTCCCCCTT
GATGGCAGCTTTGATTTCATCATAAAAAGCATCCTTCTCCAGCCTCACTG
GGAGGGCAACCCCTGAAACATCAACAGGGGGTAC
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