CB290411

Overview
NameCB290411
Unique NameCB290411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:91..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 63/94 (67.02%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L V+L K+  YDEIK  +K  +EGKLKG LGY ED VVS  F+G S SS FDA AGI LS KFVKLVSWYD E+GYSTRV DL+
Sbjct:  233 VPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLV 326          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = -1
Query:  300 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIV 584
            VP  +VS V L VR+EK A YDEIK A+K  SEG L G LGY EDD+V+    G +RSS FDAKAGI+L+K FVKLVSWYD EWGYS RV DL+V
Sbjct:  234 VPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLV 328          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.015e-27
Identity = 63/94 (67.02%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L V+L K+  YDEIK  +K  +EGKLKG LGY ED VVS  F+G S SS FDA AGI LS KFVKLVSWYD E+GYSTRV DL+
Sbjct:  233 VPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLV 326          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.490e-27
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            +P  DVS V L VRLEK A YD+IK  IK  SEG+LKG LGY ED+VVS  F+G++ SS FDAKAGI L+ KFVKL+SWYD E+GYS RV DLI
Sbjct:  234 IPTSDVSVVDLVVRLEKGASYDQIKEVIKKASEGELKGILGYTEDEVVSTDFLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLI 327          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 61/95 (64.21%), Postives = 70/95 (73.68%), Query Frame = -1
Query:  300 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIV 584
            VP +DVS V L  R EK A YDEIKAA+K  S+G LKG LGY ED VVS  F+G + SS FDA AGI L+K FVKL++WYD EWGYS RV DL+V
Sbjct:  234 VPTLDVSVVDLVCRTEKSATYDEIKAAVKEASKGPLKGILGYTEDHVVSTDFIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLLV 328          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = -1
Query:  300 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIV 584
            VP  +VS V L VRLEK A YDEIK A+K  ++G L G LGY ED++VS    G +RSS FDAKAGI+L+K FVKLVSWYD EWGYS RV DL+V
Sbjct:  234 VPTSNVSVVDLTVRLEKGATYDEIKEAVKAAADGPLNGILGYTEDEIVSTDLNGDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLV 328          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L V+L K+A YDEIKA IK  SE +LKG LGY ED VVS  F+G + SS FDA AGI LS KFVKLV+WYD E+GYSTRV DL+
Sbjct:  232 VPTVDVSVVDLTVKLAKEATYDEIKAVIKKASENELKGILGYTEDAVVSSDFLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLV 325          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.000e-26
Identity = 64/101 (63.37%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  282 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWKTQ 584
            VP  DVS V L  RL   A YDEIKAAIK  SE ++KG LGY E  VVS  F+G S SS FDA+AGIAL+  FVKLVSWYD EWGYS+RV DLI  M K +
Sbjct:  232 VPTADVSVVDLTARLVNPASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.000e-26
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  +VS V L VRL K+  YD+IKAA+K  SEG L+G LGY EDDVVS  F G +RSS FDAKAGI LSK FVK+VSWYD E+GYS RV DLI  M K
Sbjct:  231 VPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQK 329          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.306e-26
Identity = 61/94 (64.89%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L V L+K+  Y+EIK+ IK  SEGKLKG LGY ED VVS  F+G  RSS FDA AGI L+  FVKL+SWYD E+GYSTRV DL+
Sbjct:  234 VPTVDVSVVDLTVNLKKETTYEEIKSVIKAASEGKLKGVLGYTEDAVVSSDFLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLL 327          
The following BLAST results are available for this feature:
BLAST of CB290411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
G3P3_YEAST1.543e-2767.02Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P_CURLU2.015e-2765.26Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P2_YEAST2.015e-2767.02Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_CRYCU4.490e-2765.96Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_LENED5.864e-2764.21Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P_PHANO7.658e-2764.21Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P2_KLULA7.658e-2767.02Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_PHYIN1.000e-2663.37Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_PANVR1.000e-2665.66Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_PICPA1.306e-2664.89Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290411 ID=CB290411; Name=CB290411; organism=Citrus sinensis; type=EST; length=584bp
TTTTTTTTTTTTTTTTTCTTATAAAAGCAAGTTTCCAATAAACAATTGGT
TTTCTCCCCAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTA
CAAGGGAAAATCTAAGCCCAACCCTGCATGAACAGGGAAGGCTCTGGATA
ATGTCTTGGAAACAATTTTATTTAAACTCAAACCCTCTACATAAAAACAC
AAACACCACATTTAGCACAAAAAAACCCCCCACTTACCACAACTAAGCGG
GTTACATACTCAAGCCCCCCCGAGTAAGTTACTGGGTCTTCCACATGGGG
ACAATCAAATCCCCCACACGAGTACTGTACCCCCACTCCTTGTCATACCA
TGAAACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCAT
CAAAAAAACTTGACCTACTGGCACCAACAAAGGCGGGGGATACCACATCA
TCCTCAGGGTATCCCAAAAAACCCTTTAGTTTCCCCTCTGACTCCCCCTT
GATGGCAGCTTTGATTTCATCATAAAAAGCATCCTTCTCCAGCCTCACTG
GGAGGGCAACCCCTGAAACATCAACAGGGGGTAC
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