CB290411

Overview
NameCB290411
Unique NameCB290411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:91..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.467e-26
Identity = 61/94 (64.89%), Postives = 69/94 (73.40%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L VRL+K A Y+EI  AIK  S G+LKG LGY ED VVS  F+G+  SS FD KAGI LS  FVKL+SWYD E+GYSTRV DL+
Sbjct:  234 VPTVDVSVVDLTVRLKKSATYEEISEAIKAASNGELKGILGYTEDAVVSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLL 327          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.467e-26
Identity = 61/99 (61.62%), Postives = 69/99 (69.70%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  +VS V L VR+EK A YDEIK AIK  +EG LKG L Y EDD VS   +G   SS FDAKAGI+L+  FVKLVSWYD EWGYS RV DL+  + K
Sbjct:  234 VPTANVSVVDLTVRIEKGATYDEIKQAIKEAAEGPLKGVLAYTEDDFVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 332          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.467e-26
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L V+L K+A YDEIKAA+K  S+GKLK  +GY ED VVS  F+G + S+ FDA AGI LS KFVK+V+WYD E+GYS RV DL+
Sbjct:  232 VPTVDVSVVDLTVKLAKEATYDEIKAAVKKASQGKLKNVVGYTEDSVVSSDFLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLV 325          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.467e-26
Identity = 60/94 (63.83%), Postives = 69/94 (73.40%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L VR  KD  YDEIKAAIK  SEG++KG L Y ED VVS  F+G + SS FDA AGI LS +FVKLVSWYD E+G+S RV D++
Sbjct:  233 VPTVDVSVVDLTVRFAKDVTYDEIKAAIKKASEGEMKGILAYTEDAVVSTDFLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVDMV 326          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.106e-25
Identity = 62/99 (62.63%), Postives = 71/99 (71.72%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  DVS V L  RL K A Y+EIKAA+K  + G LKG L Y ED+VVS  FVG++ SS FDAKAGI+L+  FVKLVSWYD E+GYS RV DLI  M K
Sbjct:  236 VPTPDVSVVDLTCRLGKGASYEEIKAAVKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHK 334          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.106e-25
Identity = 61/94 (64.89%), Postives = 66/94 (70.21%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP  +VS V L  RLEK   YDEIK A+K  SE +LKG LGY EDD+VS    G   SS FDAKAGIAL+  FVKLVSWYD EWGYS RV DLI
Sbjct:  234 VPTSNVSVVDLTCRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLI 327          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.444e-25
Identity = 61/94 (64.89%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP  DVS V L V+L K A YDEIKAA+K  SEGKLK  +GY ED VVS  F+G + S+ FDA AGI LS KFVKLV+WYD E+GYSTRV DL+
Sbjct:  232 VPTTDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLV 325          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-25
Identity = 60/94 (63.83%), Postives = 67/94 (71.28%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP  DVS V L V+L K   Y++IKAAIK  SEG +KG LGY ED VVS  F G + SS FDA AGI LS +FVKLVSWYD EWGYS RV DL+
Sbjct:  235 VPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLV 328          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.464e-25
Identity = 62/97 (63.92%), Postives = 69/97 (71.13%), Query Frame = -1
Query:  294 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPM 584
            VP  +VS V L  RL+K A YD+IK  +K  SEG LKG LGY ED VVS  F G SRSS FDA AGIAL+  FVKLVSWYD E+GYS RV DL+V M
Sbjct:  233 VPTPNVSVVDLTCRLQKPAKYDDIKKVMKAASEGPLKGILGYTEDQVVSSDFNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDLLVHM 329          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.464e-25
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L V+L K A Y+EIKA +K  SE +LKG +GY ED VVS  F+G + SS FDA AGI LS +FVKLVSWYD E+GYSTRV DL+
Sbjct:  232 VPTVDVSVVDLTVKLAKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLV 325          
The following BLAST results are available for this feature:
BLAST of CB290411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
G3P_DEBHA8.467e-2664.89Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_COLLN8.467e-2661.62Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P1_KLULA8.467e-2662.77Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P1_CANGA8.467e-2663.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_SCHMA1.106e-2562.63Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_ASPNG1.106e-2564.89Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P1_KLUMA1.444e-2564.89Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P2_SCHPO1.886e-2563.83Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P_TRISI2.464e-2563.92Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P3_KLUMA2.464e-2563.83Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290411 ID=CB290411; Name=CB290411; organism=Citrus sinensis; type=EST; length=584bp
TTTTTTTTTTTTTTTTTCTTATAAAAGCAAGTTTCCAATAAACAATTGGT
TTTCTCCCCAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTA
CAAGGGAAAATCTAAGCCCAACCCTGCATGAACAGGGAAGGCTCTGGATA
ATGTCTTGGAAACAATTTTATTTAAACTCAAACCCTCTACATAAAAACAC
AAACACCACATTTAGCACAAAAAAACCCCCCACTTACCACAACTAAGCGG
GTTACATACTCAAGCCCCCCCGAGTAAGTTACTGGGTCTTCCACATGGGG
ACAATCAAATCCCCCACACGAGTACTGTACCCCCACTCCTTGTCATACCA
TGAAACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCAT
CAAAAAAACTTGACCTACTGGCACCAACAAAGGCGGGGGATACCACATCA
TCCTCAGGGTATCCCAAAAAACCCTTTAGTTTCCCCTCTGACTCCCCCTT
GATGGCAGCTTTGATTTCATCATAAAAAGCATCCTTCTCCAGCCTCACTG
GGAGGGCAACCCCTGAAACATCAACAGGGGGTAC
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