CB290411

Overview
NameCB290411
Unique NameCB290411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:91..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  +VS V L VRLEK A Y++IKAA+K  +EG++KG LGY EDDVVS  F G   +S FDAKAGIAL+  FVKLVSWYD E GYS +V DLI  + K
Sbjct:  233 VPTPNVSVVDLTVRLEKPATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  +VS V L VRLEK A Y++IKAA+K  +EG++KG LGY EDDVVS  F G   +S FDAKAGIAL+  FVKLVSWYD E GYS +V DLI  + K
Sbjct:  233 VPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  +VS V L VRLEK A Y++IKAA+K  +EG++KG LGY EDDVVS  F G   +S FDAKAGIAL+  FVKLVSWYD E GYS +V DLI  + K
Sbjct:  233 VPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  +VS V L VRLEK A Y++IKAA+K  +EG++KG LGY EDDVVS  F G   +S FDAKAGIAL+  FVKLVSWYD E GYS +V DLI  + K
Sbjct:  233 VPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  +VS V L VRLEK A Y++IKAA+K  +EG++KG LGY EDDVVS  F G   +S FDAKAGIAL+  FVKLVSWYD E GYS +V DLI  + K
Sbjct:  233 VPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  +VS V L VRLEK A Y++IKAA+K  +EG++KG LGY EDDVVS  F G   +S FDAKAGIAL+  FVKLVSWYD E GYS +V DLI  + K
Sbjct:  233 VPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP  +VS V L VRLEK A Y++IKAA+K  +EG++KG LGY EDDVVS  F G   +S FDAKAGIAL+  FVKLVSWYD E GYS +V DLI  + K
Sbjct:  233 VPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEG-KLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP VDVS V L VR++  A Y++IKA +K  SE  +LKG LGY ++DVVS  F+G + SS FDAKAGI L+  FVKL+SWYD E+GYS RV DLIV + K
Sbjct:  234 VPTVDVSVVDLTVRIKNGASYEDIKATMKAASESPELKGILGYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 60/94 (63.83%), Postives = 65/94 (69.15%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP  +VS V L  R+EK A YDEIK  IK  SEG L G L Y ED+VVS    G   SS FDAKAGI+L+K FVKLVSWYD EWGYS RV DLI
Sbjct:  234 VPTANVSVVDLTARIEKGATYDEIKEVIKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLI 327          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.086e-24
Identity = 60/97 (61.86%), Postives = 69/97 (71.13%), Query Frame = -1
Query:  294 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPM 584
            VP  +VS V L  RL+K A YD+IKAAIK  SEG +KG LGY +D VVS  F G + SS FDA AGIAL++ FVKLVSWYD E GYS RV DL+  M
Sbjct:  233 VPTPNVSVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHM 329          
The following BLAST results are available for this feature:
BLAST of CB290411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
G3P1_ESCF37.168e-2561.62Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_SHIFL9.362e-2561.62Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY9.362e-2561.62Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI9.362e-2561.62Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ECOLI9.362e-2561.62Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL69.362e-2561.62Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO579.362e-2561.62Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_YARLI1.223e-2459.00Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_NEUCR1.223e-2463.83Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_XENLA2.086e-2461.86Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290411 ID=CB290411; Name=CB290411; organism=Citrus sinensis; type=EST; length=584bp
TTTTTTTTTTTTTTTTTCTTATAAAAGCAAGTTTCCAATAAACAATTGGT
TTTCTCCCCAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTA
CAAGGGAAAATCTAAGCCCAACCCTGCATGAACAGGGAAGGCTCTGGATA
ATGTCTTGGAAACAATTTTATTTAAACTCAAACCCTCTACATAAAAACAC
AAACACCACATTTAGCACAAAAAAACCCCCCACTTACCACAACTAAGCGG
GTTACATACTCAAGCCCCCCCGAGTAAGTTACTGGGTCTTCCACATGGGG
ACAATCAAATCCCCCACACGAGTACTGTACCCCCACTCCTTGTCATACCA
TGAAACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCAT
CAAAAAAACTTGACCTACTGGCACCAACAAAGGCGGGGGATACCACATCA
TCCTCAGGGTATCCCAAAAAACCCTTTAGTTTCCCCTCTGACTCCCCCTT
GATGGCAGCTTTGATTTCATCATAAAAAGCATCCTTCTCCAGCCTCACTG
GGAGGGCAACCCCTGAAACATCAACAGGGGGTAC
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