CB290412

Overview
NameCB290412
Unique NameCB290412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:325..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290412 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.256e-60
Identity = 111/146 (76.03%), Postives = 123/146 (84.25%), Query Frame = 2
Query:   59 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 496
            MGK+KIGINGFGRIGRLVARV LQ DDVELVAVNDPFITT+YMTYMFKYD+VHG WKH ++K+KDDKTLLFGEKPVTVFGVRNPEEIPW E GA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNE++Y  ++
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKYTSDV 146          
BLAST of CB290412 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 2.797e-60
Identity = 112/146 (76.71%), Postives = 119/146 (81.51%), Query Frame = 2
Query:   59 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 496
            M K+KIGINGFGRIGRLVARV LQ DDVELVAVNDPFI+TDYMTYMFKYD+VHGQWKHHE+KVKD KTLLFGEK V VFG RNPEEIPW   GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE EYK ++
Sbjct:    1 MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKSDI 146          
BLAST of CB290412 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 4.772e-60
Identity = 110/146 (75.34%), Postives = 122/146 (83.56%), Query Frame = 2
Query:   59 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 496
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++ +KD KTLLFGEKPVTVFG+RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE++Y  ++
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIALKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKYTSDV 146          
BLAST of CB290412 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 6.232e-60
Identity = 109/146 (74.66%), Postives = 122/146 (83.56%), Query Frame = 2
Query:   59 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 496
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT               V+ISAPSKDAPMFV GVNE++Y  ++
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDI 146          
BLAST of CB290412 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 6.232e-60
Identity = 109/146 (74.66%), Postives = 122/146 (83.56%), Query Frame = 2
Query:   59 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 496
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT               V+ISAPSKDAPMFV GVNE++Y  ++
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDI 146          
BLAST of CB290412 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.063e-59
Identity = 113/143 (79.02%), Postives = 119/143 (83.22%), Query Frame = 2
Query:   65 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 493
            K+KIGINGFGRIGRLVARV L+RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWK+ EL VKD  TLLFG+KPVTVF  RNPEEIPWA TGA+ +VESTGVFT               VIISAPSKDAPMFVVGVNENEYKPE
Sbjct:    4 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPE 146          
BLAST of CB290412 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 4.039e-59
Identity = 108/146 (73.97%), Postives = 121/146 (82.88%), Query Frame = 2
Query:   59 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 496
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHG WKH ++ +KD KTLLFG+KPVTVFG+RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE++Y  ++
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGHWKHSDITLKDSKTLLFGDKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKYTSDV 146          
BLAST of CB290412 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 6.890e-59
Identity = 108/145 (74.48%), Postives = 119/145 (82.07%), Query Frame = 2
Query:   62 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 496
            GK+KIGINGFGRIGRLVARV L RDD+ELV VNDPFI+TDYM+YMFKYDSVHG+WKHHE+ VKD KTLLFGEK V VFG RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE++YK ++
Sbjct:    5 GKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSDV 149          
BLAST of CB290412 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 8.999e-59
Identity = 110/146 (75.34%), Postives = 121/146 (82.88%), Query Frame = 2
Query:   59 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 496
            M KVK+GINGFGRIGRLVARVILQRDD ELVAVNDPFI+TDYMTYMFKYDSVHGQ K HE+K+KD+KTLLFGE PV VFG RNPEEIPW + GA++VVESTGVFT               V+ISAPSKDAPMFVVGVNE+EYK +L
Sbjct:    1 MAKVKVGINGFGRIGRLVARVILQRDDCELVAVNDPFISTDYMTYMFKYDSVHGQCKSHEIKLKDEKTLLFGETPVAVFGCRNPEEIPWGQAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 146          
BLAST of CB290412 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 4.466e-58
Identity = 109/145 (75.17%), Postives = 120/145 (82.76%), Query Frame = 2
Query:   62 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 496
            GK+KIGINGFGRIGRLVARV LQRDD+ELVAVNDPFI+T+ +T +FKYDSVHGQWK HE+KVKD+KTLLFGEK V VFG RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE+EYK +L
Sbjct:    5 GKIKIGINGFGRIGRLVARVALQRDDIELVAVNDPFISTESLTSLFKYDSVHGQWKKHEVKVKDEKTLLFGEKHVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 149          
The following BLAST results are available for this feature:
BLAST of CB290412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
G3PX_HORVU1.256e-6076.03Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE2.797e-6076.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE4.772e-6075.34Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ6.232e-6074.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI6.232e-6074.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA1.063e-5979.02Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE4.039e-5973.97Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY6.890e-5974.48Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR8.999e-5975.34Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA4.466e-5875.17Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290412 ID=CB290412; Name=CB290412; organism=Citrus sinensis; type=EST; length=496bp
GACTCTCTACAACTTTCTTCACCACTCTTTCACCGCTCAATTTCATCTCT
CGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATT
GGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGT
TGCTGTTAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTA
AGTACGACAGTGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAG
GACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGT
TAGGAACCCAGAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTG
TGGAGTCGACTGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTG
AAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCC
TATGTTTGTTGTCGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
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