CB290413

Overview
NameCB290413
Unique NameCB290413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.349e-12
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            FV D  S   DAKAGI LS  FVKLV+WYDNEWGYS RVVDL +H++K
Sbjct:  288 FVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAK 335          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.068e-12
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            +G++ SSIFDAKAGI+L+  FVKLV+WYDNEW YS RV+DLI +++
Sbjct:  287 IGNNHSSIFDAKAGISLNDNFVKLVAWYDNEWAYSRRVIDLISYIA 332          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.068e-12
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 139
            F+ D+ SS+F+ KAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.068e-12
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            F+G + SSIFDA+AGIAL+  FVKLVSWYDNE+GYS RV DLI +++
Sbjct:  286 FIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIA 332          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.068e-12
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            GD+ S IFDA AGIAL+  F+KLV+WYDNEWGYS RV+DLI +++
Sbjct:  287 GDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.068e-12
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 139
            F G+  SSIFDAKAGIAL+  FVKLV+WYDNE+GYS RVVDL+ +M
Sbjct:  390 FNGNPHSSIFDAKAGIALNDNFVKLVAWYDNEYGYSNRVVDLLRYM 435          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.007e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HM+  +
Sbjct:  286 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.007e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HM+  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.007e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F+ D+ S +FDAKAGI LS  FVKL++WYDNEWGYS RV +L+ +++K
Sbjct:  284 FISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVAK 331          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.234e-12
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G+  SSIFD  AGIAL+K FVKL+SWYDNEWGYS R  DL+ + +K
Sbjct:  285 FTGNDNSSIFDRDAGIALNKTFVKLISWYDNEWGYSRRCCDLLGYAAK 332          
The following BLAST results are available for this feature:
BLAST of CB290413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3PC_CHLRE2.349e-1268.75Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ERYGR3.068e-1265.22Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_DROHY3.068e-1265.22Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_CRYNE3.068e-1268.09Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_COCIM3.068e-1266.67Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PT_MOUSE3.068e-1271.74Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_HUMAN4.007e-1264.00Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_FELCA4.007e-1264.00Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P2_AGABI4.007e-1260.42Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_PHACH5.234e-1264.58Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bc12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290413 ID=CB290413; Name=CB290413; organism=Citrus sinensis; type=EST; length=407bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGTCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTACGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGTGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGG
TCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCAGAGCCTTACCTG
CTCATGCAGGGTTGTGCTTAGATTTTCCCTTGTAGTATGCAAGAAGAGTT
GGTGAACCAACTTATGTTTTGTTAGCGAGAAAACAATTGTCTATTGGAAA
CTTGCTT
back to top