CB290413

Overview
NameCB290413
Unique NameCB290413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.523e-11
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIV 133
            F+G   SSIFDA+AGI L+  FVKL+ WYDNEWGYS RV DL+V
Sbjct:  284 FIGHHASSIFDAQAGIQLNPNFVKLIVWYDNEWGYSARVCDLLV 327          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.523e-11
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            F  D RSSIFDA AGI L+  F K+VSWYDNEWGYS RV+DL++ M+
Sbjct:  287 FRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDLMLTMA 333          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.989e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F  +S SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M+  +
Sbjct:  284 FNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.989e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F  +S SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M+  +
Sbjct:  284 FNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.989e-11
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F+G   SSIFDA AGIAL+ +F KLV+WYDNE GY+TR+VDL+ ++ K
Sbjct:  285 FIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYATRIVDLLEYVEK 332          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.989e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            FV D+ SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI +++
Sbjct:  292 FVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.989e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            FV D+ SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI +++
Sbjct:  292 FVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.598e-11
Identity = 28/42 (66.67%), Postives = 37/42 (88.10%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 127
            F GD+R+SIFDA+AGIAL   F+K+VSWYDNEWGYS +V+++
Sbjct:  285 FRGDARTSIFDAEAGIALDGTFIKVVSWYDNEWGYSNKVLEM 326          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.393e-11
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            FV D+ SSIFDA A I L+  FVKL+SWYDNE+GYS RVVDLI +++
Sbjct:  292 FVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.393e-11
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            FV D+ SSIFDA A I L+  FVKL+SWYDNE+GYS RVVDLI +++
Sbjct:  292 FVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
The following BLAST results are available for this feature:
BLAST of CB290413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3P_LYOSH1.523e-1168.18Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P1_SYNY31.523e-1165.96Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_RAT1.989e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_MOUSE1.989e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_CHLPN1.989e-1162.50Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P3_CAEEL1.989e-1168.09Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL1.989e-1168.09Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_RALSO2.598e-1166.67Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P3_CAEBR3.393e-1165.96Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEBR3.393e-1165.96Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290413 ID=CB290413; Name=CB290413; organism=Citrus sinensis; type=EST; length=407bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGTCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTACGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGTGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGG
TCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCAGAGCCTTACCTG
CTCATGCAGGGTTGTGCTTAGATTTTCCCTTGTAGTATGCAAGAAGAGTT
GGTGAACCAACTTATGTTTTGTTAGCGAGAAAACAATTGTCTATTGGAAA
CTTGCTT
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