CB290413

Overview
NameCB290413
Unique NameCB290413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:114..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.431e-11
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLI 130
            FVGD  SSIFDA A I+L+  FVKL++WYDNE+GYS RVVDLI
Sbjct:  291 FVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDLI 333          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.431e-11
Identity = 29/48 (60.42%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G+  +SIFDAKAG++L+K FVKL++WYDNE GYS++V+DL+  +SK
Sbjct:  284 FNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYSSKVLDLVSLVSK 331          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            FVG + SSIFD+ AGI L+  FVKL++WYDNE+GYS RVVDL+ ++++
Sbjct:  283 FVGSTDSSIFDSTAGIQLNPNFVKLIAWYDNEYGYSRRVVDLLKYVAE 330          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F+  + SS FDA+AGIAL+  FVKL++WYDNE+GYS RVVDLI +M K
Sbjct:  286 FLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGYSCRVVDLISYMFK 333          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            F+ DSRSSI+D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ HM+
Sbjct:  301 FISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            FV D  SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI +++
Sbjct:  292 FVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            F GD+ SSIFD+ A I+L+  FVKL++WYDNE+GYS RVVDLI +++
Sbjct:  291 FTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIA 337          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            F+ D+RSSI+D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ HM+
Sbjct:  301 FINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
The following BLAST results are available for this feature:
BLAST of CB290413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3P_ONCVO4.431e-1172.09Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_BUCAI4.431e-1160.42Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_PLESA5.787e-1160.42Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_ECHMU5.787e-1164.58Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3PG_TRYBB5.787e-1158.82Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P1_CAEEL5.787e-1168.09Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_BRUMA9.871e-1161.70Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3PG_TRYCR9.871e-1156.86Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bc12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290413 ID=CB290413; Name=CB290413; organism=Citrus sinensis; type=EST; length=407bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGTCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTACGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGTGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGG
TCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCAGAGCCTTACCTG
CTCATGCAGGGTTGTGCTTAGATTTTCCCTTGTAGTATGCAAGAAGAGTT
GGTGAACCAACTTATGTTTTGTTAGCGAGAAAACAATTGTCTATTGGAAA
CTTGCTT
back to top