CB290413

Overview
NameCB290413
Unique NameCB290413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:114..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.627e-15
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 142
            F+GD+ SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++
Sbjct:  283 FLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.627e-15
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            GDSRSSIFDA AGIAL+  F+KL+SWYDNEWGYS RVVDLI +++K
Sbjct:  287 GDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIAK 332          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.127e-14
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            FVG + SSIFDAKAGI+L+  FVKLVSWYDNE+GYS RVVDLI HM K
Sbjct:  287 FVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHK 334          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.127e-14
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F+GD RSSIFDA AGI L+  FVKL+SWYDNE+GYSTRVVDL+ H++K
Sbjct:  285 FLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.127e-14
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F+ DSRSS+FDAKAGI L+  FVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  285 FLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.472e-14
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            GD+ SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+ ++SK
Sbjct:  288 GDNHSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLHYISK 333          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.922e-14
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F+ D  S IFDA AGI L+ KF KLV+WYDNEWGYS RVVDLI H+SK Q
Sbjct:  286 FIHDDASCIFDASAGIMLNSKFCKLVAWYDNEWGYSNRVVDLIAHISKVQ 335          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.510e-14
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F+GD+ SSIFDAKAGI L+  FVKL+SWYDNE+GYS RVVDLIV ++K
Sbjct:  286 FIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.510e-14
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            GD RSSIFDA AGIAL+ +FVKL+SWYDNEWGYS RV+DLI +++K
Sbjct:  288 GDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAK 333          
BLAST of CB290413 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.510e-14
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F+GD+ SSIFDA AGI L+K FVKL++WYDNEWGYS RVVDL+V  +K
Sbjct:  285 FIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLLVFAAK 332          
The following BLAST results are available for this feature:
BLAST of CB290413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3P_ASHGO8.627e-1576.60Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P_AJECA8.627e-1576.09Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_SCHMA1.127e-1477.08Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_PICPA1.127e-1472.92Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PICAN1.127e-1475.00Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_SCLSC1.472e-1476.09Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3PC_CHOCR1.922e-1470.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_YARLI2.510e-1472.92Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_PARBA2.510e-1473.91Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_LENED2.510e-1470.83Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bc12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290413 ID=CB290413; Name=CB290413; organism=Citrus sinensis; type=EST; length=407bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGTCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTACGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGTGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGG
TCTGAGTTTAAATAAAATTGTTTCCAAGACATTATCCAGAGCCTTACCTG
CTCATGCAGGGTTGTGCTTAGATTTTCCCTTGTAGTATGCAAGAAGAGTT
GGTGAACCAACTTATGTTTTGTTAGCGAGAAAACAATTGTCTATTGGAAA
CTTGCTT
back to top